Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1902
(531 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.64
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 1.9
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 23 2.6
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 23 2.6
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 23 2.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.6
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 2.6
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 3.4
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 22 3.4
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 4.5
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 7.9
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 7.9
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 0.64
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 474 ILWIVLWNTDGALTSPKGMRLYSYCPSSVTKAV 376
I+WIVL G +P RLY S+ K V
Sbjct: 8 IMWIVLVLISGCSGNPDAKRLYDDLLSNYNKLV 40
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 23.0 bits (47), Expect = 1.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 211 VCGLS-SSKQKAQKGTLPPTKSRGSVGPIIR*HPIYVIGPC 330
V GL+ SS++ GT P + V + HP+Y G C
Sbjct: 243 VAGLNVSSRRSDMNGTTPLDEKPLDVSSNDKVHPLYGHGVC 283
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 439 IN*SERHAVVFILPIKCYKGSFTTGGLGDWCLI 341
IN E+ V +P+ Y G+F +G W I
Sbjct: 105 INYIEQIPVPVPVPVPVYYGNFPPRSMGPWISI 137
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 439 IN*SERHAVVFILPIKCYKGSFTTGGLGDWCLI 341
IN E+ V +P+ Y G+F +G W I
Sbjct: 105 INYIEQIPVPVPVPVPVYYGNFPPRSMGPWISI 137
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 439 IN*SERHAVVFILPIKCYKGSFTTGGLGDWCLI 341
IN E+ V +P+ Y G+F +G W I
Sbjct: 105 INYIEQIPVPVPVPVPVYYGNFPPRSMGPWISI 137
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.6 bits (46), Expect = 2.6
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 221 YRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEASRS 373
Y N K+ + V +LSG +F+ + + Q PVA+ + S
Sbjct: 357 YNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAAS 407
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.6 bits (46), Expect = 2.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 439 IN*SERHAVVFILPIKCYKGSFTTGGLGDWCLI 341
IN E+ V +P+ Y G+F +G W I
Sbjct: 338 INYIEQIPVPVPVPVPVYYGNFPPRSMGPWISI 370
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 22.2 bits (45), Expect = 3.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 439 IN*SERHAVVFILPIKCYKGSFTTGGLGDWCLI 341
IN E+ V +P+ Y G+F +G W I
Sbjct: 105 INYIEQIPVPVPIPVPVYYGNFLPRPMGPWISI 137
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 22.2 bits (45), Expect = 3.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 46 TEPVVYRPCRMSHTER--QLVRDMVKEMVDNGRAR 144
T PV+ PC+ H+ R L D + +V G AR
Sbjct: 48 TSPVIGEPCQRVHSSRIPDLSYDFI--VVGGGAAR 80
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 4.5
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +2
Query: 221 YRALNRKPKKEHYPLPRVEDQLDLLSGNTLFTSLDLASGYYQTPVAEASRS 373
Y N K+ + V +LSG +F+ + + Q PVA+ + S
Sbjct: 304 YNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVS 354
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.0 bits (42), Expect = 7.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -1
Query: 63 IHDWFRVVKVDNHLS 19
+H W ++ D+HLS
Sbjct: 91 LHSWMTLMWTDSHLS 105
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.0 bits (42), Expect = 7.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +3
Query: 267 QESRISWTYYP 299
QE ++ WT YP
Sbjct: 22 QEEKLEWTKYP 32
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,575
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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