Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1901
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.99 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.0  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   6.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   6.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 479 AKKRIQCSSTLLRAVVFVSRQRTNGTEESFVEELQQL-QGAFVYPGLGGSQCT*RVTLII 655
           A+KR++C+  L+  VV  +    N   ++  ++L QL Q A + P       T +V L+ 
Sbjct: 189 AEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLR 248

Query: 656 A 658
           A
Sbjct: 249 A 249


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +2

Query: 476 CAKKRIQCSSTLLRAVVFVSRQRTNGTEESFVEELQQLQGAFVYPGLGGSQC 631
           C  + + C    LR VV + +   NGT     E++          G  GS C
Sbjct: 134 CDVEMVSCKDAALRKVVPLKKLCNNGT----CEDIGNSHRCHCSDGYSGSYC 181


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 459 SYIYLGNYPNYTL 421
           +Y +LG YPN TL
Sbjct: 57  NYAFLGVYPNGTL 69


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 298 NVPPANPLSYIQVHKYTLIN 239
           NVPP  P      H YT+I+
Sbjct: 113 NVPPLTPSPGPPSHPYTVIS 132


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 448 IDIAGTCSRLCKEAHPMFLDPSPSRC 525
           ++ AG    LC    P   +P P RC
Sbjct: 8   METAGEVLDLCVRKRPHSPEPYPPRC 33


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 41  TSTT*MRHTP*DIVLRSQYSHNGCPTLQTETHYCFTAEI 157
           TS     H   DIV   Q  HN    L  E + CF  +I
Sbjct: 196 TSLIHSTHLNGDIVKEHQNLHNKICNLIDEFNECFGLQI 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,937
Number of Sequences: 336
Number of extensions: 3213
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)