Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1901
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.7  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    25   9.9  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   9.9  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.9  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 486 SASNVPRPFSEPLSSSVGS--GPTEPKNRLSRSCSSCKALSCTRGSGAASA 632
           S+S+ P   S  +SSS  S   PT   + +S S SS  + S T  S + S+
Sbjct: 278 SSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSS 328


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 284 QPAILYTGT*IYFNKFFTNEPSAKGSNKSSFT 189
           Q A +   T I  N+FF N PS  GS + SF+
Sbjct: 342 QEASIKGATSIDDNEFFNNLPSIAGSQEPSFS 373


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 224 PSAKGSNKSSFTGGRTSCESARLF 153
           P  KG N +SFT  R    + RLF
Sbjct: 238 PREKGDNPASFTSSRNKRSNERLF 261


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 313 ELVDPNVPPANPLSYIQVHKYTLINFLPTNLVQKEVISRVL 191
           E  +P     N      +  + ++NFLP     +E +SRVL
Sbjct: 206 ETTNPKFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVL 246


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 253 IYVPVYRIAGWPGARWGRPVQCSPAKARGTAGGAD 357
           I   +Y+  G PG   G     +P  A G A G D
Sbjct: 604 IMAKIYQAGGAPGGMPGAAPGAAPGAAPGAAPGGD 638


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 620 PRAPGTRKRLAAAAAPRQTILRFRWSAAD*RRQRLGEGSRNIGCASL 480
           PR PG R   A  A  +    + R    +  R  LGE   N+G  SL
Sbjct: 63  PRTPGHRIIKAKGAYTKDRSAKRRRGRIEIERHLLGEFDDNVGSNSL 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,417
Number of Sequences: 5004
Number of extensions: 50929
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)