Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1901
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0198 + 21890523-21891002                                         29   2.6  
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916...    29   4.5  
01_06_0664 + 30999365-31002089,31002220-31002686                       29   4.5  
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230...    28   5.9  
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    28   5.9  

>03_05_0198 + 21890523-21891002
          Length = 159

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 319 SPAKARGTAGGADGLQYERSGSAPLSRRTWA 411
           +PA ARG   G DG +   SGSAP+  R W+
Sbjct: 53  APAPARGGRSGGDGGR--GSGSAPVPARQWS 81


>11_04_0090 -
           13391028-13391117,13391369-13391502,13391532-13391659,
           13391684-13391718,13391719-13392159
          Length = 275

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 546 PTEPKNRLSRSCSSCKALSCTRGSGAASAHEGS 644
           PT P    S SCS  +A   T G G+A    GS
Sbjct: 44  PTAPPKHHSLSCSGSQAPRATTGEGSAVGDRGS 76


>01_06_0664 + 30999365-31002089,31002220-31002686
          Length = 1063

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 241 LLKYIYVPVYRIAGWPGARW----GRPVQCSPAKARGTAGGADGLQY 369
           LL Y Y+    + GW   R     GRPV  + A+AR   GGA  L +
Sbjct: 787 LLVYDYMDNGSLDGWLHGRRAINDGRPVVAAVARARSARGGAPALDW 833


>08_01_0282 +
           2299688-2299859,2300314-2300384,2300780-2300861,
           2300949-2301067,2301338-2301415,2301500-2301619,
           2301729-2301788
          Length = 233

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 298 WGRPVQCSPAKARGTAGGADGLQYERSGSAPLSR 399
           WG     + A A G+A G DG     SG A + R
Sbjct: 4   WGTGSSAASAAAEGSAAGGDGAARSSSGGAAVIR 37


>03_02_0913 +
           12344096-12344125,12344284-12345970,12346243-12346573,
           12346712-12347567,12347760-12347883,12348469-12348688,
           12348771-12349229,12349318-12349519
          Length = 1302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -1

Query: 268 IQVHKYTLINFLPTNL-VQKEVISRV-LLVVGPL--VSPRAYFCREA 140
           I+  KYTLI FLP NL +Q   ++ V  LV+  L  + P A F R A
Sbjct: 165 IRTSKYTLITFLPKNLFIQFHRLAYVYFLVIAALNQLPPLAVFGRTA 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,327
Number of Sequences: 37544
Number of extensions: 408165
Number of successful extensions: 1502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)