Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1901
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)                   37   0.013
SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)                    29   2.6  
SB_2974| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             29   2.6  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                29   2.6  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_5249| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)
          Length = 1198

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
 Frame = -1

Query: 601 ESALQLLQLLDKRFFGSVGPLPTDEDNGS--EKGRGTLDALLCTTYCXXXXXXXXXXXXL 428
           E A QLLQ+L++RFF    P  +   + S  +  RG  +AL                   
Sbjct: 106 EKAAQLLQILERRFFQYSPPSISCSAHCSYSQSQRGLSEALATA---------------- 149

Query: 427 HPELTMPMFSEITARFQTARTEVRQXXXXXXXXXLVNIELVD 302
           HPE+T+ MF E+T+RF +A    ++         L NIEL+D
Sbjct: 150 HPEITVHMFQEMTSRFPSATFAGQRCILQYMLPWLANIELMD 191


>SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)
          Length = 353

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 598 SALQLLQLLDKRFFGSV-GPLPTDEDNGSEKGRGTLDALLCT 476
           S  + L  LDK   G V G LP+DED   E      D L CT
Sbjct: 279 SCWEYLMWLDKANHGGVRGKLPSDEDTNGETEDDEDDVLPCT 320


>SB_2974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 598 SALQLLQLLDKRFFGSV-GPLPTDEDNGSEKGRGTLDALLCT 476
           S  + L  LDK   G V G LP+DED   E      D L CT
Sbjct: 87  SCWEYLMWLDKANHGGVRGKLPSDEDTNGETEDDEDDVLPCT 128


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 513 SEPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASAHEGS 644
           +E LSSS  SGP  P   L+ S    K+ S T G+ A      S
Sbjct: 451 NEDLSSSACSGPATPSGTLTPSKFKAKSKSATEGNLAGQDETSS 494


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 656 LLST*PFMCTGCPRAPGTRKRLAAAAAPRQTILRFRWSAA 537
           +LS  P M   C +    + +LA    P + +L+F+WS A
Sbjct: 657 ILSKNPEMTEKCSKVEFGKIKLATKLTPYEAVLKFKWSKA 696


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 461  GPAVGCAKKRIQCSSTLLRAVVFVSRQRTNGTEESFVEEL 580
            G   GCA    +   TLLRA+  +   R    EE  ++EL
Sbjct: 2085 GTCYGCAAAATEHCVTLLRALAMIPATRERLVEEGLIQEL 2124


>SB_5249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 230 NEPSAKGSNKSSFTGGRTSCESARLFLP 147
           NEP +  +N S F G    C++ R +LP
Sbjct: 88  NEPDSYHANDSDFQGNAVLCDTLRQYLP 115


>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 546 PTEPKNRLS--RSCSSCKALSCTRGS 617
           PT  +NR++  R  +SC+ LSCTRGS
Sbjct: 573 PTRFENRVAPFRWGASCRLLSCTRGS 598


>SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 181 GPLVSPRAYFCREAVMRFGLKGGAAVVTILRP*NYISRCV 62
           GP+V+P A+  RE  + F  +G  + +   RP  +I  CV
Sbjct: 385 GPMVTPPAFVPRECNVEFSTEGKVSFIARSRP--FIFPCV 422


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 274 SYIQVHKYTLINFLPTNLVQK 212
           ++I+  KYT+I FLP NL ++
Sbjct: 51  NFIRTSKYTIITFLPKNLFEQ 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,408,689
Number of Sequences: 59808
Number of extensions: 428974
Number of successful extensions: 945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)