Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1901
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical pr... 30 1.3
AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core alpha1,3... 30 1.3
Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 29 2.3
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 29 2.3
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical pr... 28 5.3
>Z66497-8|CAA91285.2| 433|Caenorhabditis elegans Hypothetical
protein K08F8.3 protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 518 AVVFVSRQRTNGTEESFVEELQQLQGAFVYPGLGGSQC 631
A FVS +TN E FV++LQ+ +Y G G +C
Sbjct: 238 AAWFVSHCQTNSKREDFVKKLQKHLQIDIYGGCGPMKC 275
>AJ745071-1|CAG32977.1| 433|Caenorhabditis elegans core
alpha1,3-fucosyltransferase protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 518 AVVFVSRQRTNGTEESFVEELQQLQGAFVYPGLGGSQC 631
A FVS +TN E FV++LQ+ +Y G G +C
Sbjct: 238 AAWFVSHCQTNSKREDFVKKLQKHLQIDIYGGCGPMKC 275
>Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 516 EPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASA 632
E ++SS SG + +R SRS ++ S T GS ASA
Sbjct: 392 EHVTSSSASGSSASPSRYSRSSATATGASITAGSALASA 430
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 516 EPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASA 632
E ++SS SG + +R SRS ++ S T GS ASA
Sbjct: 522 EHVTSSSASGSSASPSRYSRSSATATGASITAGSALASA 560
>Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical
protein H39E23.1c protein.
Length = 1062
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 516 EPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASA 632
E ++SS SG + +R SRS ++ S T GS ASA
Sbjct: 392 EHVTSSSASGSSASPSRYSRSSATATGASITAGSALASA 430
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 516 EPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASA 632
E ++SS SG + +R SRS ++ S T GS ASA
Sbjct: 522 EHVTSSSASGSSASPSRYSRSSATATGASITAGSALASA 560
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 516 EPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASA 632
E ++SS SG + +R SRS ++ S T GS ASA
Sbjct: 522 EHVTSSSASGSSASPSRYSRSSATATGASITAGSALASA 560
>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 474 VVQRSASNVPRPFSEPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASAHEGS 644
+V R AS P P + P SS G P P++ +S SS G G H G+
Sbjct: 665 MVSRMAS--PNPMASPRHSSGGMTPRSPQDGMSSRGSSGGQTPRQGGGGGRGGHFGT 719
>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
protein K08E4.1 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 474 VVQRSASNVPRPFSEPLSSSVGSGPTEPKNRLSRSCSSCKALSCTRGSGAASAHEGS 644
+V R AS P P + P SS G P P++ +S SS G G H G+
Sbjct: 665 MVSRMAS--PNPMASPRHSSGGMTPRSPQDGMSSRGSSGGQTPRQGGGGGRGGHFGT 719
>Z77134-2|CAB00873.1| 877|Caenorhabditis elegans Hypothetical
protein R09H10.4 protein.
Length = 877
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -1
Query: 274 SYIQVHKYTLINFLPTNLVQKEVISRVLLVVGPLVS 167
+Y+QVH + +++ ++E I+R+L+ VGP ++
Sbjct: 339 AYLQVHACMRLTAEDSSMTKREKIARMLVEVGPSIA 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,216
Number of Sequences: 27780
Number of extensions: 307023
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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