Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1901
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    26   0.28 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    25   0.50 
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    25   0.50 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.87 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 481 KEAHPMFLDPSPSRCLRQSAADQRN 555
           ++AH M L+P+P   LRQ+  +Q N
Sbjct: 179 QKAHNMELEPTPGNTLRQTFENQVN 203


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 495 NVPRPFSEPLSSSVGSGPTEPK 560
           NVP+P   P  +  G GP  PK
Sbjct: 25  NVPQPGRRPFPTFPGQGPFNPK 46


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 495 NVPRPFSEPLSSSVGSGPTEPK 560
           NVP+P   P  +  G GP  PK
Sbjct: 11  NVPQPGRRPFPTFPGQGPFNPK 32


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 613 PRVHESALQLLQLLDKRFFGSVG 545
           PR+ + A+Q+L + +K FF  +G
Sbjct: 48  PRLAKKAIQVLGVTEKEFFDQMG 70


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 580 QLLDKRFFGSVGPLPTDEDNGSEKGRGTLDA 488
           Q L +RF+  +G L T ED    + R  LDA
Sbjct: 550 QGLFRRFYNLLGKLSTIEDADKNQCRHYLDA 580


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 254 IYFNKFFTNEPSAKGS 207
           +Y NK FTN   A G+
Sbjct: 205 LYLNKHFTNSEEAPGN 220


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 254 IYFNKFFTNEPSAKGS 207
           +Y NK FTN   A G+
Sbjct: 205 LYLNKHFTNSEEAPGN 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,770
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)