Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1900
         (415 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   0.68 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.68 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.2  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   1.2  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   3.6  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   3.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   4.8  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   4.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   4.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   4.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   4.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   4.8  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   4.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   4.8  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   4.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       20   8.3  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 229 TSQDPTEHLNVNFFDFNRN 285
           T   PT+   V FFD NRN
Sbjct: 377 TEMSPTDISLVGFFDVNRN 395


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYIRMLGRVL*RHKRARDGE 10
           R  +AH+LCL+ K +  +    V    KRA+DG+
Sbjct: 250 RIEIAHALCLTNKNLVSKPPHEV---EKRAQDGQ 280


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 RLLFRTFVTSQDPTEHRNVNFFERERA 197
           +LL+R  VT  D    RN+N F  + A
Sbjct: 312 KLLYRIPVTKTDSMLIRNINLFSLQLA 338


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 RLLFRTFVTSQDPTEHRNVNFFERERA 197
           +LL+R  VT  D    RN+N F  + A
Sbjct: 137 KLLYRIPVTKTDSMLIRNINLFSLQLA 163


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYIRMLGRVL*RHKRAR 19
           R  +AH+LCL+ ++I I    R +   K  R
Sbjct: 36  RIEIAHALCLTERQIKIWFQNRRMKLKKELR 66


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYIRMLGRVL*RHKRAR 19
           R  +AH+LCL+ ++I I    R +   K  R
Sbjct: 187 RIEIAHALCLTERQIKIWFQNRRMKLKKELR 217


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYIRMLGRVL*RHKRAR 19
           R  +AH+LCL+ ++I I    R +   K  R
Sbjct: 246 RIEIAHALCLTERQIKIWFQNRRMKLKKELR 276


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 183  ERERARISASLSHVRD 230
            + E+ARI+A L  +RD
Sbjct: 1251 KEEKARIAADLKELRD 1266


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 183  ERERARISASLSHVRD 230
            + E+ARI+A L  +RD
Sbjct: 1251 KEEKARIAADLKELRD 1266


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 253 RIEMAHALCLTERQIKI 269


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 250 RIEIAHALCLTERQIKI 266


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 250 RIEIAHALCLTERQIKI 266


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 272 RIEIAHALCLTERQIKI 288


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 250 RIEIAHALCLTERQIKI 266


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 206 RIEIAHALCLTERQIKI 222


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 250 RIEIAHALCLTERQIKI 266


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 38  RIEIAHALCLTERQIKI 54


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 274 RIEIAHALCLTERQIKI 290


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 250 RIEIAHALCLTERQIKI 266


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 35  RIEMAHALCLTERQIKI 51


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 55  HPNVNFFEGETERVSKHCTHFAFSFARS 138
           HP      G+ ++  +H  HF  SF  +
Sbjct: 76  HPETEKDWGDGDKHDRHERHFESSFGNN 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,729
Number of Sequences: 336
Number of extensions: 2182
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)