Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1900
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.5  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   2.0  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   2.0  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   2.7  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   6.1  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    24   8.1  

>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 413 PSPCGPSPFILY*FDKSIGLC---GAELWTVDSTCTGPD-IHNIQSGFRLKSKKFTFRCS 246
           PS CG + +  Y FD  I LC   GA        C  PD  H+ +   R   +KF   CS
Sbjct: 86  PSFCGNTLYTYYGFDNPIFLCGPNGAPRMCGTCKCWLPDRSHHSRVSMRC-IRKFDHYCS 144

Query: 245 VGSCDV 228
               DV
Sbjct: 145 FVGKDV 150


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 159  EHRNVNFFERERARISASLSHVRDVTGPYRASECKFL*FQSKPALYVVYIRACT 320
            E R   F+++   R+    S    V  P  AS C F+ ++ K      ++R CT
Sbjct: 1193 EARLTKFYDQNNQRLFIHPSSTMFVNSP-NASRCTFVAYEQKVETTKPFLRNCT 1245


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -3

Query: 347 AELWTVDSTCTGPDIHNIQSGFRLKSKKFTFRCSVGSCDV--TNVRERCRDAC-SLSLKE 177
           +E  T+DST +   + NIQ      +KK   +  V + D+  +N  +  +D+  +L+   
Sbjct: 49  SEKETIDSTKSKISLENIQQEMGALAKKIFHKLGVKATDLGFSNEHDDSQDSLQTLAPSP 108

Query: 176 IYIPML 159
            Y+P+L
Sbjct: 109 SYVPLL 114


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 181 LREREHASRHLSRTFVTSQDPTEHLNVNFFDFNRNPLCMLCISGPVHVESTVHSSAPHNP 360
           + E E  +  LS   V  ++P ++ +++  D N N       S   + EST  +SAP + 
Sbjct: 384 VNEVEPMAPELSSAVVEKKEPEDYESISAVDENTNDSNESLPSSHDYSESTKENSAPDSL 443

Query: 361 ML 366
           +L
Sbjct: 444 LL 445


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -3

Query: 365 SIGLCGAELWTVDSTCTGPDIHNIQSGFRLKSKKFTFRCSVGSCDVTNVRERCRDACSLS 186
           SI L    LW +D          +Q   R+     TF CS    D+  + E C+D C L 
Sbjct: 408 SISLDDFVLWLLDRA------QRLQQAVRISHPSTTF-CSNVENDIKEIFEVCKDYCMLH 460

Query: 185 LK 180
           ++
Sbjct: 461 VQ 462


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 385 YCTSLTRASDCAVPSC 338
           YCTS  R   C  PSC
Sbjct: 204 YCTSYLRNQQCPNPSC 219


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 190 REHASRHLSRTFVTSQDPTEHLNVNFFDFNRNPLCMLCISGPVHVESTVHSSAPHNPMLL 369
           ++   R+   T   + +PT  L+ NF D   + + +  + GP    ST+    P +P LL
Sbjct: 254 KKKVKRYGYDTSAYNPNPTFQLD-NFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALL 312

Query: 370 S 372
           +
Sbjct: 313 T 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,311
Number of Sequences: 5004
Number of extensions: 35882
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)