Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1900
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604... 29 1.9
01_01_0583 - 4321992-4322165,4322261-4322353,4322445-4322828,432... 29 1.9
03_04_0103 + 17291663-17292493 28 3.4
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816... 28 3.4
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 27 7.8
06_03_0739 + 24004629-24005219 27 7.8
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 7.8
04_04_0930 - 29480700-29480853,29481007-29483036 27 7.8
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 27 7.8
>07_03_1396 -
26259614-26259739,26259853-26259939,26260032-26260409,
26260497-26260692,26260794-26261032,26261132-26261272
Length = 388
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 410 SPCGPSPFILY*FDKSI-GLCGAELWTVDSTCTGPDIH 300
S C +L+ +D + + G+ WT +CT D+H
Sbjct: 78 SQCARGELMLFPYDAQLDNIAGSGKWTHSDSCTAADVH 115
>01_01_0583 -
4321992-4322165,4322261-4322353,4322445-4322828,
4322909-4322993,4323206-4323444,4323542-4323747,
4324052-4324163
Length = 430
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 350 GAELWTVDSTCTGPDIH---NIQSGFRLKSKK 264
G+E WT +CT D+H S FRL+ +K
Sbjct: 158 GSERWTRSDSCTAADVHVAVGSPSTFRLREQK 189
>03_04_0103 + 17291663-17292493
Length = 276
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 207 PRCVLSLSQRNLHSDAR*GLVTSRTCEREGEMRAVLAHSLCLSLKEIYIRMLG 49
P CV+ Q H + + + TCE +G + A+L + +EI +R G
Sbjct: 209 PLCVVRSPQHEEHMEEAKQHLRNATCELDGALAALLEMRRDVESQEILVRRWG 261
>03_02_0787 +
11180794-11180958,11181051-11181230,11181396-11181611,
11181693-11181875,11182013-11182234,11182434-11182550,
11182682-11182825,11183198-11183299,11183762-11183830,
11184283-11184516
Length = 543
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -3
Query: 320 CTGPDIHNIQSGFRLKSKKFTFRCSVGSCDVTNVRERCRDACSLSLKEIYIPMLGR 153
CT DI+N+ LK T V + + C+ CSL+ + IPML R
Sbjct: 196 CTSEDINNLSHALALKEGVNTVMFPV-------MMDICKAMCSLATQNSTIPMLSR 244
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 316 VHVESTVHSSAPHN---PMLLSN*YNIKGLGPHGEG 414
VHV V AP + P LLS+ ++ L PHG+G
Sbjct: 450 VHVWHVVDDGAPPSSMSPELLSSSQSLPPLAPHGDG 485
>06_03_0739 + 24004629-24005219
Length = 196
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 302 VYQGLYTWSPRSTARH 349
VY G Y WSPR RH
Sbjct: 181 VYAGGYAWSPRRIIRH 196
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 26.6 bits (56), Expect = 7.8
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = +3
Query: 6 ASHHLSHACDVTRPYRASECKFL*GRDR----ESEQALHAFRLLFRTFVTSQDPT-EHRN 170
A HH+S A +R RAS + G R E A RL + TSQ T H
Sbjct: 117 AGHHVSAAPPPSRLERASSAPYAKGNSRLPLTRRENGPPASRLSRSSSATSQLSTVAHAP 176
Query: 171 VNFFERERARISASLSHV 224
F R SAS+S +
Sbjct: 177 GTVFSGRRTLSSASVSSI 194
>04_04_0930 - 29480700-29480853,29481007-29483036
Length = 727
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 9 SHHLSHACDVTRPYRASECKFL*GRDRESEQALHAFRLLFRTFVTSQDPTEHRNVNFFER 188
+HH + A TR Y A EC F GR + ++AF + +T + P+ +V + R
Sbjct: 495 THHSTQAVAGTRGYMAYEC-FFTGR-ASLDTDVYAFGVFVMEVLTGRSPSS--SVTYHNR 550
Query: 189 ER 194
++
Sbjct: 551 QQ 552
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 64 VNFFEGETERVSKHCTHFAFSF 129
V FF+G RV H + F FSF
Sbjct: 59 VRFFQGPPSRVHPHYSGFGFSF 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,321,559
Number of Sequences: 37544
Number of extensions: 248881
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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