Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1900
(415 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.66
SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8) 29 1.5
SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15) 29 1.5
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 29 1.5
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 29 1.5
SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 28 3.5
SB_43096| Best HMM Match : POR_N (HMM E-Value=4) 27 4.6
SB_41457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 6.1
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38) 27 8.1
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 30.3 bits (65), Expect = 0.66
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Frame = -3
Query: 359 GLCGAELWTVDSTCTGPDIHNIQSGFRLKSKKFTFRCSVGSCDVTNVRERCRDACSLSLK 180
G CG ++ T + + H + G + K+F F S+ + +ER + C L K
Sbjct: 107 GNCGKDMATPERLAKHMETHKKKFGCDICEKEFVFYSSLEKHRKVH-QERNPNHCHLCEK 165
Query: 179 EIYIPMLGRVL*RHERAKEKAKCVQC----LLTLSVSPSKKFTFGCSVGSCDV 33
E P +V R ++ +C C +T + K+ GC C+V
Sbjct: 166 EFDTPSKLKVHMRKHTQEKPYECETCGKQFRVTSDLIRHKRIHTGCKPFLCEV 218
>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
Length = 271
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 241 GPVTSRTCERDAEMRALSLSKKFTFRCSVGSCDVTNVRK 125
G RTCE+ A R ++ + +R S+GS +T++ K
Sbjct: 88 GITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 126
>SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)
Length = 347
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 241 GPVTSRTCERDAEMRALSLSKKFTFRCSVGSCDVTNVRK 125
G RTCE+ A R ++ + +R S+GS +T++ K
Sbjct: 117 GITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 155
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 211 LSRTFVTSQDPTEHLNVNFFDFNRNPLCMLCISGPVHVESTVHSSAPHNPMLLSN*YNIK 390
LSRT + P LN+ + +C I+ HV T + + N YNI+
Sbjct: 890 LSRTPDEDKTPVS-LNLETEHYRGQQICSTTITQDNHVPETTLAEK-RGAEAIQNVYNIR 947
Query: 391 GLGPHG 408
GL P G
Sbjct: 948 GLNPEG 953
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/66 (30%), Positives = 28/66 (42%)
Frame = +1
Query: 211 LSRTFVTSQDPTEHLNVNFFDFNRNPLCMLCISGPVHVESTVHSSAPHNPMLLSN*YNIK 390
LSRT + P LN+ + +C I+ HV T + + N YNI+
Sbjct: 249 LSRTPDEDKTPVS-LNLETEHYRGQQICSTTITQDNHVPETTLAEK-RGAEAIQNVYNIR 306
Query: 391 GLGPHG 408
GL P G
Sbjct: 307 GLNPEG 312
>SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = +1
Query: 1 PVHLTISRTLVTSQ----DPTEHPNVNFFE 78
P H TI+ +V+S+ DP PN+NFF+
Sbjct: 205 PKHSTINHVIVSSRGPFIDPNALPNINFFK 234
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 216 REMPRCVLSLSQRNLHSDAR*GLVTSRTCEREG 118
R +P+C + +N D+ LVTS + E EG
Sbjct: 59 RPIPKCTKNFHSKNFPPDSDTALVTSSSSEEEG 91
>SB_43096| Best HMM Match : POR_N (HMM E-Value=4)
Length = 480
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 96 EQALHAFRLLFRTFVTSQDPTEHRNVNFFERERAR 200
+ A+H L + T TS TEHR+ N F RE R
Sbjct: 365 DSAIHGGGLRWLTPATSPYNTEHRHRNVFLREALR 399
>SB_41457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 96 EQALHAFRLLFRTFVTSQDPTEHRNVNFFERERAR 200
+ A+H L + T TS TEHR+ N F RE R
Sbjct: 98 DSAIHGGGLRWLTPATSPYNTEHRHRNVFLREALR 132
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.1 bits (57), Expect = 6.1
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Frame = -3
Query: 275 KSKKFTFRCSVGSCDVTNVRERCRDACS-----LSLKEIYIPMLGRVL*RHERAKEKAKC 111
KSKK C G C + RC + C + K +P + L R + K++ K
Sbjct: 309 KSKKCYQSCQGGHCTMKCKAPRCYNLCDSKTCIIPTKAPPLPRECKTL-RGDSCKQECKT 367
Query: 110 VQCLLTLSVSPSKKFTFGCSVGSCDVTSVR 21
+C LT K T+ GSCD T R
Sbjct: 368 AKCALTC----KGKGTY----GSCDQTCER 389
>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 285 PALYVVYIRACTRGVHGPQLGTAQSDALVKL 377
P +Y +R R V L T++SDALVKL
Sbjct: 627 PCVYHAILRGLERLVVSFALSTSESDALVKL 657
>SB_20303| Best HMM Match : Trans_reg_C (HMM E-Value=0.38)
Length = 1354
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +1
Query: 1 PVHLTISRTLVTSQDPTEHPNVNFFEGETERVSKHCTHFAFSFARS 138
P+ +TI + + P + N+N + +T+ +S+H ++ F ++
Sbjct: 95 PIDITIYSDVSMNPGPQDKNNLNHTKTKTKNLSRHYSNLLFEIVQA 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,370
Number of Sequences: 59808
Number of extensions: 309764
Number of successful extensions: 745
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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