Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1900
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z78200-1|CAB01579.1|  377|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    27   5.4  
AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...    27   5.4  
Z81083-4|CAB03102.1|  645|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical ...    26   9.4  

>Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical
           protein ZK455.8a protein.
          Length = 757

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 96  EQALHAFRLLFRTFVTSQDPTEHRNVNFFERERARISAS-LSHVRDVTGPYRASECK 263
           +Q L++     RTF   ++   H   ++FER+   I  S  + V+D+    + + CK
Sbjct: 224 DQVLNSTIAFPRTFNKQRNELHHDQCHYFERDYVHIKLSPWAQVKDMNATGKINRCK 280


>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 227 TNVRERCRDACSLSLKEIYIPMLGRVL--*RHERAKEKAKCVQCLLTLSVSPSKKFT 63
           T + +    +CSLSL EIY PM G  L    H+      + V C     VS  K +T
Sbjct: 189 TGLDDLIEGSCSLSLAEIYGPMSGWPLGFEEHQLPSSSMRNVSCEEPCPVSNRKYWT 245


>Z78200-1|CAB01579.1|  377|Caenorhabditis elegans Hypothetical
           protein T04H1.1 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = +3

Query: 45  PYRASECKFL*GRDRESEQALHAFRLLFRTFVTSQDPTEHRNVNFFERERARISASLSH 221
           PY +S    L G    +   L    +LF  F  S +P  HR V   E E  +   SL H
Sbjct: 93  PYFSSAQHLLDGNLHFTYTRLLVLSVLFYGFFYSDNPATHRFVGTRELEHIQDGKSLEH 151


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
            protein H11E01.3 protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 175  ISLREREHASRHLSRTFVTSQDPTEHLNVNFFDFNRNPLCMLCISGPVHVESTVHSSAPH 354
            IS     H+  H ++  +     +EH+++   D  R+P     ++   H +   H +APH
Sbjct: 1061 ISSEVEAHSEHHHTQEEIPIVQTSEHIDLT--DVPRSPA--FSMNDSHHEDQLSHEAAPH 1116

Query: 355  NPM 363
            +P+
Sbjct: 1117 SPV 1119


>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 332 VDSTCTGPDIHNIQSGFRLKSKKFTF 255
           +D   TGPD   I  G R  S KFTF
Sbjct: 55  IDVKITGPDNKEIYKGERESSGKFTF 80


>Z81083-4|CAB03102.1|  645|Caenorhabditis elegans Hypothetical
           protein F44F1.5 protein.
          Length = 645

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 78  GRDRESEQALHAFRLLFRTFVTSQDPTEHRNVNFFERERARIS-ASLSHVRDVTGP 242
           G+ R      H   +LF T + S+    HRNVN   +  AR S  ++  V  VT P
Sbjct: 503 GQMRGRNLIFHFSNILF-TKIISEHSVHHRNVNPVSKTNARPSPRNMEEVFGVTYP 557


>AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical
           protein F18A12.3 protein.
          Length = 481

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   PVHLTISRTLVTSQDPTEHPNVNFFE 78
           P  +T+S  L+  QDP+  P V+FF+
Sbjct: 61  PDCITLSHELLNYQDPSVDPCVDFFQ 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,404
Number of Sequences: 27780
Number of extensions: 214972
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)