Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1900
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   4.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   4.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   4.2  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   4.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   4.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   4.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   5.5  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.6  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYIRMLGRVL*RHKRAR 19
           R  +AH+LCL+ ++I I    R +   K  R
Sbjct: 38  RIEIAHALCLTERQIKIWFQNRRMKLKKELR 68


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 QDPTEHRNVNFFERERARISASLSHVRDVTGPYR 248
           Q  T ++ VN+ + +R +    LS   D TG Y+
Sbjct: 79  QKHTANKVVNYLKTKRPKDWERLSAKYDSTGEYK 112


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 110 VQCLLTLSVSPSKKFTFGCSVGSCDVTSVREMVRC 6
           + C      S  K    G  +G C   +V+EM+RC
Sbjct: 239 LNCWTQTENSLEKAKQVGAFMG-CPTRNVKEMIRC 272


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 110 VQCLLTLSVSPSKKFTFGCSVGSCDVTSVREMVRC 6
           + C      S  K    G  +G C   +V+EM+RC
Sbjct: 110 LNCWTQTENSLEKAKQVGAFMG-CPTRNVKEMIRC 143


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 QDPTEHRNVNFFERERARISASLSHVRDVTGPYR 248
           Q  T ++ VN+ + +R +    LS   D TG Y+
Sbjct: 79  QKHTANKVVNYLKTKRPKDWERLSAKYDSTGEYK 112


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 110 VQCLLTLSVSPSKKFTFGCSVGSCDVTSVREMVRC 6
           + C      S  K    G  +G C   +V+EM+RC
Sbjct: 239 LNCWTQTENSLEKAKQVGAFMG-CPTRNVKEMIRC 272


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 38  RIEIAHALCLTERQIKI 54


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 38  RIEIAHALCLTERQIKI 54


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 RAVLAHSLCLSLKEIYI 61
           R  +AH+LCL+ ++I I
Sbjct: 300 RIEIAHALCLTERQIKI 316


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 274 FNRNPLCMLCISGPVHVESTVHSSA 348
           F+     M+C++G V    ++H+S+
Sbjct: 287 FDAQTNSMICLNGQVLKRESIHNSS 311


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 400 DQALLYCTSLTRASDCAV 347
           D+ LLY + LT    CA+
Sbjct: 117 DKTLLYMSKLTLVLSCAM 134


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 12  HHLSHACDVTRPYRASECKFL*GRDRESEQAL 107
           +HL+  C VT      + +F   ++R++   L
Sbjct: 343 NHLNSTCSVTNSPHQKKLRFHLAKERKASTTL 374


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 311 PDIHNIQSGFRLKSKKFTFRCS 246
           P++ +  +GF ++S  F   CS
Sbjct: 375 PEVSSTYTGFGIQSTDFVGDCS 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,604
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)