Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1898
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 176 1e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 98 5e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 78 5e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 5e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 3e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 33 0.015
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.062
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.44
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 2.3
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 5.4
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 7.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 176 bits (428), Expect = 1e-45
Identities = 77/82 (93%), Positives = 79/82 (96%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IV NWDDMEKIWHHTFYN+L V
Sbjct: 75 IVNNWDDMEKIWHHTFYNELRV 96
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.9 bits (233), Expect = 5e-22
Identities = 43/79 (54%), Positives = 57/79 (72%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
G KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE G
Sbjct: 19 GFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERG 78
Query: 320 IVTNWDDMEKIWHHTFYND 376
I+ NW DME+IW + Y+D
Sbjct: 79 IIQNWSDMEEIWSY-IYSD 96
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 77.8 bits (183), Expect = 5e-16
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 313
G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E
Sbjct: 13 GFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPME 72
Query: 314 HGIVTNWDDMEKIWHHTFYNDL 379
+GI+ ++++M ++W +TF+ L
Sbjct: 73 NGIIRDFEEMNQLWDYTFFEKL 94
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.0 bits (109), Expect = 5e-07
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 24/104 (23%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK--------------D 250
G K G+AG+DAP VFP+++ R G G M K D
Sbjct: 15 GYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLD 73
Query: 251 SYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNDL 379
++G++A K +L YPI HG + NWD ME+ W + + L
Sbjct: 74 FFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYL 117
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 149 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIV 325
+AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P E ++
Sbjct: 37 RAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVI 92
Query: 326 TNWDDMEKIWHHTF 367
+NWD ME++ +TF
Sbjct: 93 SNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 33.1 bits (72), Expect = 0.015
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 149 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 328
+ GF+G+D P+ V PS G + G + Y+ +S G + +K I +G V
Sbjct: 24 RIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVE 75
Query: 329 NWDDMEKIWHH 361
NWD +W +
Sbjct: 76 NWDVTVDLWRY 86
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.062
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 164 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 307
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.44
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 272 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 183
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 264 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 148
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 301 FEGQDTSFALCLISYIRVLLSHTDHHA 221
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 305 PIEHGIVTNWDDMEKIWHHTF 367
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 224 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 310
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Frame = +2
Query: 332 WDDME---KIWHHTFYNDLCV 385
W D++ K+ HH F+ DLCV
Sbjct: 185 WFDLKLHAKVKHHKFFCDLCV 205
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 262 SYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGS 134
+Y +LL D + + G +DR + + + + C L H+G+
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSGT 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,766
Number of Sequences: 5004
Number of extensions: 35178
Number of successful extensions: 77
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -