Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1898
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 180 2e-46
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 180 2e-46
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 180 2e-46
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 180 2e-46
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 180 2e-46
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 180 2e-46
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 180 2e-46
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 180 2e-46
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 180 3e-46
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 171 1e-43
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 157 2e-39
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 157 2e-39
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 157 2e-39
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 151 1e-37
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 117 3e-27
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 96 9e-21
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 77 6e-15
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 53 8e-08
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 40 6e-04
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 40 6e-04
U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical pr... 29 1.1
U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 28 2.6
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 2.6
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 2.6
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 2.6
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 2.6
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 2.6
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 2.6
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 27 3.4
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 27 3.4
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 27 3.4
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 26 7.9
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 180 bits (439), Expect = 2e-46
Identities = 80/82 (97%), Positives = 81/82 (98%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKIWHHTFYNDLCV 385
IVTNWDDMEKIWHHTFYN+L V
Sbjct: 76 IVTNWDDMEKIWHHTFYNELRV 97
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 180 bits (438), Expect = 3e-46
Identities = 79/80 (98%), Positives = 80/80 (100%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74
Query: 320 IVTNWDDMEKIWHHTFYNDL 379
IVTNWDDMEKIWHHTFYN+L
Sbjct: 75 IVTNWDDMEKIWHHTFYNEL 94
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 171 bits (416), Expect = 1e-43
Identities = 76/79 (96%), Positives = 78/79 (98%)
Frame = +2
Query: 149 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 328
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 329 NWDDMEKIWHHTFYNDLCV 385
NWDDMEKIWHHTFYN+L V
Sbjct: 65 NWDDMEKIWHHTFYNELRV 83
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 157 bits (381), Expect = 2e-39
Identities = 71/71 (100%), Positives = 71/71 (100%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKI 352
IVTNWDDMEKI
Sbjct: 76 IVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 157 bits (381), Expect = 2e-39
Identities = 71/71 (100%), Positives = 71/71 (100%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKI 352
IVTNWDDMEKI
Sbjct: 76 IVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 157 bits (381), Expect = 2e-39
Identities = 71/71 (100%), Positives = 71/71 (100%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDMEKI 352
IVTNWDDMEKI
Sbjct: 76 IVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 151 bits (367), Expect = 1e-37
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 16 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 75
Query: 320 IVTNWDDM 343
IVTNWDDM
Sbjct: 76 IVTNWDDM 83
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 117 bits (281), Expect = 3e-27
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = +2
Query: 227 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNDLCV 385
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN+L V
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV 53
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 95.9 bits (228), Expect = 9e-21
Identities = 39/79 (49%), Positives = 55/79 (69%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 319
G+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ +++YP+EHG
Sbjct: 18 GVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSIEYPMEHG 77
Query: 320 IVTNWDDMEKIWHHTFYND 376
IV NW DMEKIW + F D
Sbjct: 78 IVNNWSDMEKIWEYIFGQD 96
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 76.6 bits (180), Expect = 6e-15
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGILTLKYPIE 313
G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L + YP++
Sbjct: 16 GFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMD 75
Query: 314 HGIVTNWDDMEKIWHHTF 367
+GIV NWDDM +W HTF
Sbjct: 76 NGIVRNWDDMAHVWDHTF 93
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 52.8 bits (121), Expect = 8e-08
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Frame = +2
Query: 140 GMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGMGQKDSYVGDEAQSKR 283
G K G+AG+ P+ + PS V Q V G+ D ++GDEA S
Sbjct: 16 GYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSPA 75
Query: 284 GI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNDL 379
T+KYPI HGIV +WD ME+ W + L
Sbjct: 76 ATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYL 108
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 39.9 bits (89), Expect = 6e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 149 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 328
K G ++PR V SIV + +H+ V + + +E K + ++ PIE G V
Sbjct: 16 KIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSLFYVR-PIERGYVV 69
Query: 329 NWDDMEKIWHHTF 367
NWD ++IW TF
Sbjct: 70 NWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 39.9 bits (89), Expect = 6e-04
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +2
Query: 149 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 328
K G ++PR V SIV + +H+ V + + +E K + ++ PIE G V
Sbjct: 16 KIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSLFYVR-PIERGYVV 69
Query: 329 NWDDMEKIWHHTF 367
NWD ++IW TF
Sbjct: 70 NWDTQQQIWEKTF 82
>U41278-7|AAT81193.1| 680|Caenorhabditis elegans Hypothetical
protein F33G12.6b protein.
Length = 680
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 281 FCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEH-HLLRNRPCTYREP 132
FC + H++ + P R D +RG +++H RNRPC P
Sbjct: 393 FCVIKKSEHENKENAHLPPREDRTLDVTTRGGEKDKHSEYARNRPCAASLP 443
>U41278-6|AAK31510.3| 771|Caenorhabditis elegans Hypothetical
protein F33G12.6a protein.
Length = 771
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 281 FCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEH-HLLRNRPCTYREP 132
FC + H++ + P R D +RG +++H RNRPC P
Sbjct: 393 FCVIKKSEHENKENAHLPPREDRTLDVTTRGGEKDKHSEYARNRPCAASLP 443
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 206 FPRS-RGTRREEHHLLRNRPCTYREPLSTTNAGNFFVAHLELV 81
FP+ R+ EH ++R RPC E +ST+ G A + +V
Sbjct: 56 FPKQCSALRKNEHVMIRGRPCKIVE-MSTSKTGKHGHAKVHMV 97
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 127 DNGSRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGRYGTEGL 252
+NG V+G P RG P+G DGR G GL
Sbjct: 480 ENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGVNGL 521
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 127 DNGSRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGRYGTEGL 252
+NG V+G P RG P+G DGR G GL
Sbjct: 479 ENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGVNGL 520
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 127 DNGSRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGRYGTEGL 252
+NG V+G P RG P+G DGR G GL
Sbjct: 479 ENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGVNGL 520
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 127 DNGSRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGRYGTEGL 252
+NG V+G P RG P+G DGR G GL
Sbjct: 480 ENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGVNGL 521
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 127 DNGSRYVQGXXXXXXXXXXXVPLDRGKAPPSGRDGRYGTEGL 252
+NG V+G P RG P+G DGR G GL
Sbjct: 516 ENGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGVNGL 557
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 149 KAGFAGDDAPRAVFPSIVGRPRHQG 223
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 203 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 370
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTFL 687
Query: 371 ND 376
D
Sbjct: 688 LD 689
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 203 GRPRHQGVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 370
G PRH+ + G+ ++++V + EA + + K HG +WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTFL 687
Query: 371 ND 376
D
Sbjct: 688 LD 689
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 199 RGKAPPSGRDGRYGTEG 249
RGKA +GRDGR G EG
Sbjct: 216 RGKAGHTGRDGRPGLEG 232
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of
efl-1 mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 334 PVSDDSVFDGVFEGQDTSFALCLISYIRVLLSHTDHH 224
PVS DSV F +D CL+S +R+L++ D H
Sbjct: 232 PVSSDSVPSQQFSKEDL---YCLLSRVRMLVTFEDWH 265
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -3
Query: 218 DGGA---FPRS-RGTRREEHHLLRNRPCTYREPLSTTNAGNFFVAHLELV 81
D GA FP+ R+ EH +++ RPC E +ST+ G A + +V
Sbjct: 15 DSGAAATFPKQCSALRKNEHVMIKGRPCKIVE-MSTSKTGKHGHAKVHMV 63
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -2
Query: 357 CQIFSMSSQLVTIPC-SMGYLRVRIPL----LLCASSPT*ESFCPIP 232
CQ+FS QLVT+ SMG +++++ + LL + S T + P P
Sbjct: 251 CQLFSSQPQLVTMNLNSMGTIKLQLVVTWLPLLASKSSTKPTIAPNP 297
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 293 SGYLFCSVP---HLLHKSPSVPYRPSRPDGGAF 204
SG +F +P HLL + P P P+G +F
Sbjct: 694 SGEIFLKLPELAHLLSSQSTAPLHPKVPEGNSF 726
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,660,553
Number of Sequences: 27780
Number of extensions: 212740
Number of successful extensions: 732
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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