Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1898
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.025
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 0.025
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -3

Query: 278 CSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYREPLST 123
           C VP      PSV    S P     PR   T+ + HH    RP T  EP +T
Sbjct: 121 CEVPESRDGPPSVSLS-SPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRAT 171



 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 163 CETGLAHTGSH 131
           C TGL H G H
Sbjct: 274 CHTGLGHYGHH 284


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 140 GMCKAGFAGD 169
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = -1

Query: 229 HHALMAGPSHDRGEHGARSIISCETGLAHTGSH 131
           HH+  A P H      A S       + HT  H
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 199 DRGEHGARSIISCETGLA 146
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 199 DRGEHGARSIISCETGLA 146
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 206 FPRSRGTRREEHHLLRNRPCTYREPLSTTNAGNFFVAHLEL 84
           FPRS   +      L N+    RE +      N F+ +LEL
Sbjct: 68  FPRSHRFKSLPRCQLSNKRDRSRELIKAAILANDFMKNLEL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,214
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)