Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1897
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 158 2e-39
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 140 9e-34
11_04_0414 + 17386806-17387936 29 2.5
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 29 2.5
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633... 29 2.5
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 27 7.7
04_04_0422 + 25098612-25099025,25099500-25099633,25099817-251000... 27 7.7
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 27 7.7
02_01_0412 - 3005600-3007759 27 7.7
01_05_0604 - 23583244-23584989 27 7.7
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 158 bits (384), Expect = 2e-39
Identities = 80/141 (56%), Positives = 97/141 (68%)
Frame = +1
Query: 61 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 240
Q MK D ++ + + F ++K +LQEAR F+ + RKC ++TK+LYLLNQGE
Sbjct: 3 QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62
Query: 241 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYR 420
T EAT++FFA TKLFQSKD LRRLVYL IKELSP + +VIIVTSSL KDM K D YR
Sbjct: 63 TKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYR 122
Query: 421 PAAIRALCSITDSTMLQAIER 483
AIR LC I D T+L IER
Sbjct: 123 ANAIRVLCRIIDGTLLTQIER 143
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 488 MKQAIVDKNPAVGSAA 535
+KQAIVDKNP V SAA
Sbjct: 145 LKQAIVDKNPVVASAA 160
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 140 bits (338), Expect = 9e-34
Identities = 78/148 (52%), Positives = 95/148 (64%), Gaps = 17/148 (11%)
Frame = +1
Query: 91 KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFF 270
+EE + F ++K +LQEAR F+ + R+C ++TK+LYLLNQG+ T EAT++FF
Sbjct: 15 EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74
Query: 271 ATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMT 399
ATTKLFQSKD LRR+VYL IKELSP A + VIIVTSSL KDM
Sbjct: 75 ATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMN 134
Query: 400 GKDDEYRPAAIRALCSITDSTMLQAIER 483
K D YR AIR LC I DST+L IER
Sbjct: 135 SKTDMYRANAIRVLCRIIDSTLLTQIER 162
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 488 MKQAIVDKNPAVGSAA 535
+KQAIVDKNP V SAA
Sbjct: 164 LKQAIVDKNPVVASAA 179
>11_04_0414 + 17386806-17387936
Length = 376
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 313 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 450
R+VY+C + S++ K +T DE+ PAA A SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 29.1 bits (62), Expect = 2.5
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +1
Query: 61 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 240
+SI +AR EED + + LD R V RK +L +++Y E+
Sbjct: 30 KSIGEARSKA-EEDRIISRELDHLK-----RRLADPDVPRRKMKELLLRLVYA-----EM 78
Query: 241 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-VIIVTSSLTKDMTGKDDEY 417
+A+ K+ + + L+R YL + D VI+V +++ KD+ +
Sbjct: 79 LGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLV 138
Query: 418 RPAAIRALCSITDSTMLQAI 477
AA+ A C + + A+
Sbjct: 139 VCAALTAACRLIGEEAIPAV 158
>01_02_0019 +
10262685-10262909,10263014-10263076,10263155-10263316,
10263407-10263589,10263676-10263806,10264251-10264419,
10264524-10264653,10265702-10265898
Length = 419
Score = 29.1 bits (62), Expect = 2.5
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 229 GEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGK- 405
GE L E D T L+Q ++RR+ + + P+AQD I+V SL ++ +
Sbjct: 103 GEILLKSELIDP--TTGSLYQ----LVRRMSQMAVISKQPIAQDDILVFKSLIEERAAEI 156
Query: 406 DDEYRPAAIRALCSITDSTMLQAIERGHETSY 501
D+ R + + C +T S A G E S+
Sbjct: 157 VDQLRNSHWTSTCIVTIS-KFNAFFHGQEDSH 187
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 468 QHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 358
+HC + + ++SS GG+S + +F+RH R S + +
Sbjct: 127 EHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165
>04_04_0422 +
25098612-25099025,25099500-25099633,25099817-25100067,
25100130-25100494
Length = 387
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 278 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 132
V+ + A+ V + W SK S+ V +W+ LG + + Y+ +R+
Sbjct: 312 VILPTLVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 360
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Frame = +1
Query: 190 IHI-LTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDV- 363
+HI + K++ +L QG+ ++ DI +S ++Y C++ + +
Sbjct: 265 LHIRVLKLMRILGQGDADCSEYMNDILAQVATKNESNKNAANAILYECVQTIMGIEATSG 324
Query: 364 --IIVTSSLTKDMTGKDDEYRPAAIRALC-SITDSTMLQAIERGHETS 498
++ + L + ++ +D+ R A+ L +IT T QA++R H T+
Sbjct: 325 LRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDT--QAVQR-HRTT 369
>02_01_0412 - 3005600-3007759
Length = 719
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 82 GEPSLCSALLIFYCNL 35
G P LCS +L+ +CNL
Sbjct: 660 GNPKLCSPMLVHHCNL 675
>01_05_0604 - 23583244-23584989
Length = 581
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 278 VVAKNISVASCVVNSSPWFSK*SIFVKIWMHFLGCTGVELKYLASCKRV 132
V+ + A+ V + W SK S+ V +W+ LG + + Y+ +R+
Sbjct: 380 VILPELVAAADVFRLTTWSSKPSVCVGMWIPHLGHARLRIVYIIISRRL 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,417,130
Number of Sequences: 37544
Number of extensions: 311489
Number of successful extensions: 840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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