Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1897
(560 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113545-1|AAM29550.1| 878|Drosophila melanogaster RE62270p pro... 214 8e-56
AF191563-1|AAF05719.1| 879|Drosophila melanogaster coatomer pro... 212 3e-55
AE014297-4756|AAF57160.1| 879|Drosophila melanogaster CG1528-PA... 212 3e-55
BT001628-1|AAN71383.1| 883|Drosophila melanogaster RE37840p pro... 210 7e-55
AE014297-4757|AAN14275.1| 883|Drosophila melanogaster CG1528-PB... 210 7e-55
BT010031-1|AAQ22500.1| 1159|Drosophila melanogaster RE01344p pro... 36 0.028
AJ011778-1|CAA09771.1| 1160|Drosophila melanogaster Beta3 protei... 36 0.028
AF247194-1|AAF71924.1| 1160|Drosophila melanogaster ruby protein. 36 0.028
AE014298-634|AAF45950.1| 1160|Drosophila melanogaster CG11427-PA... 36 0.028
AY484405-1|AAR86939.1| 857|Drosophila melanogaster reverse tran... 28 7.5
AY484404-1|AAR86938.1| 857|Drosophila melanogaster reverse tran... 28 7.5
>AY113545-1|AAM29550.1| 878|Drosophila melanogaster RE62270p
protein.
Length = 878
Score = 214 bits (522), Expect = 8e-56
Identities = 103/140 (73%), Positives = 121/140 (86%)
Frame = +1
Query: 64 SIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELT 243
S + + D ++ SN +QNL+KT++LQE R FN TPV+PRKCIHILTKILYL+NQGE+L
Sbjct: 3 SFRREKDDEEDGPSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLV 62
Query: 244 TQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRP 423
+EATD FFA TKLFQSKDVVLRR+VYL IKELS +A+DVIIVTSSLTKDMTGK+D YR
Sbjct: 63 AREATDCFFAMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRA 122
Query: 424 AAIRALCSITDSTMLQAIER 483
AAIRALCSITD+TMLQA+ER
Sbjct: 123 AAIRALCSITDNTMLQAVER 142
>AF191563-1|AAF05719.1| 879|Drosophila melanogaster coatomer
protein gamma subunit protein.
Length = 879
Score = 212 bits (517), Expect = 3e-55
Identities = 105/138 (76%), Positives = 119/138 (86%), Gaps = 3/138 (2%)
Frame = +1
Query: 79 RRDGKEED---SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 249
R EED SN +QNL+KT++LQE R FN TPV+PRKCIHILTKILYL+NQGE+L +
Sbjct: 6 REKDDEEDAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAR 65
Query: 250 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAA 429
EATD FFA TKLFQSKDVVLRR+VYL IKELS +A+DVIIVTSSLTKDMTGK+D YR AA
Sbjct: 66 EATDCFFAMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAA 125
Query: 430 IRALCSITDSTMLQAIER 483
IRALCSITD+TMLQA+ER
Sbjct: 126 IRALCSITDNTMLQAVER 143
>AE014297-4756|AAF57160.1| 879|Drosophila melanogaster CG1528-PA,
isoform A protein.
Length = 879
Score = 212 bits (517), Expect = 3e-55
Identities = 105/138 (76%), Positives = 119/138 (86%), Gaps = 3/138 (2%)
Frame = +1
Query: 79 RRDGKEED---SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 249
R EED SN +QNL+KT++LQE R FN TPV+PRKCIHILTKILYL+NQGE+L +
Sbjct: 6 REKDDEEDAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAR 65
Query: 250 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAA 429
EATD FFA TKLFQSKDVVLRR+VYL IKELS +A+DVIIVTSSLTKDMTGK+D YR AA
Sbjct: 66 EATDCFFAMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAA 125
Query: 430 IRALCSITDSTMLQAIER 483
IRALCSITD+TMLQA+ER
Sbjct: 126 IRALCSITDNTMLQAVER 143
>BT001628-1|AAN71383.1| 883|Drosophila melanogaster RE37840p
protein.
Length = 883
Score = 210 bits (514), Expect = 7e-55
Identities = 101/127 (79%), Positives = 115/127 (90%)
Frame = +1
Query: 103 SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTK 282
SN +QNL+KT++LQE R FN TPV+PRKCIHILTKILYL+NQGE+L +EATD FFA TK
Sbjct: 21 SNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFFAMTK 80
Query: 283 LFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDST 462
LFQSKDVVLRR+VYL IKELS +A+DVIIVTSSLTKDMTGK+D YR AAIRALCSITD+T
Sbjct: 81 LFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNT 140
Query: 463 MLQAIER 483
MLQA+ER
Sbjct: 141 MLQAVER 147
>AE014297-4757|AAN14275.1| 883|Drosophila melanogaster CG1528-PB,
isoform B protein.
Length = 883
Score = 210 bits (514), Expect = 7e-55
Identities = 101/127 (79%), Positives = 115/127 (90%)
Frame = +1
Query: 103 SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTK 282
SN +QNL+KT++LQE R FN TPV+PRKCIHILTKILYL+NQGE+L +EATD FFA TK
Sbjct: 21 SNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFFAMTK 80
Query: 283 LFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDST 462
LFQSKDVVLRR+VYL IKELS +A+DVIIVTSSLTKDMTGK+D YR AAIRALCSITD+T
Sbjct: 81 LFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNT 140
Query: 463 MLQAIER 483
MLQA+ER
Sbjct: 141 MLQAVER 147
>BT010031-1|AAQ22500.1| 1159|Drosophila melanogaster RE01344p
protein.
Length = 1159
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 247 QEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVT-SSLTKDMTGKDDEYRP 423
++A+D+F A K SK++ +++LVY+ + + QD+ +++ S+ + + + R
Sbjct: 55 RDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 114
Query: 424 AAIRALCSITDSTMLQAI 477
+A+R L SI S ++ +
Sbjct: 115 SALRVLSSIRVSMIVPIV 132
>AJ011778-1|CAA09771.1| 1160|Drosophila melanogaster Beta3 protein
protein.
Length = 1160
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 247 QEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVT-SSLTKDMTGKDDEYRP 423
++A+D+F A K SK++ +++LVY+ + + QD+ +++ S+ + + + R
Sbjct: 75 RDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 134
Query: 424 AAIRALCSITDSTMLQAI 477
+A+R L SI S ++ +
Sbjct: 135 SALRVLSSIRVSMIVPIV 152
>AF247194-1|AAF71924.1| 1160|Drosophila melanogaster ruby protein.
Length = 1160
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 247 QEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVT-SSLTKDMTGKDDEYRP 423
++A+D+F A K SK++ +++LVY+ + + QD+ +++ S+ + + + R
Sbjct: 75 RDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 134
Query: 424 AAIRALCSITDSTMLQAI 477
+A+R L SI S ++ +
Sbjct: 135 SALRVLSSIRVSMIVPIV 152
>AE014298-634|AAF45950.1| 1160|Drosophila melanogaster CG11427-PA
protein.
Length = 1160
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 247 QEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVT-SSLTKDMTGKDDEYRP 423
++A+D+F A K SK++ +++LVY+ + + QD+ +++ S+ + + + R
Sbjct: 75 RDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRA 134
Query: 424 AAIRALCSITDSTMLQAI 477
+A+R L SI S ++ +
Sbjct: 135 SALRVLSSIRVSMIVPIV 152
>AY484405-1|AAR86939.1| 857|Drosophila melanogaster reverse
transcriptase protein.
Length = 857
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 103 SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILY 216
SN N D+TT+LQ+ +++N H + +HI+ Y
Sbjct: 785 SNHTPNFDETTILQQEQHYNKR--HTLEMLHIINTPTY 820
>AY484404-1|AAR86938.1| 857|Drosophila melanogaster reverse
transcriptase protein.
Length = 857
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 103 SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILY 216
SN N D+TT+LQ+ +++N H + +HI+ Y
Sbjct: 785 SNHTPNFDETTILQQEQHYNKR--HTLEMLHIINTPTY 820
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,518,607
Number of Sequences: 53049
Number of extensions: 530810
Number of successful extensions: 1195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -