Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1897
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 157 NILPLVKGLFYQDFGRHCYLLLFHRGEPSLCSALLI 50
           NIL  V     +   R C  LL       LC ALL+
Sbjct: 59  NILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLV 94


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 155 ISTLHPCIRENASI 196
           +S+++PCI +NA+I
Sbjct: 230 MSSINPCIFDNATI 243


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 535 GGRSYCRILINNSLFHAPSQ*LAALYCL 452
           GGR++ R+L++ ++   P     AL+ L
Sbjct: 123 GGRTFLRVLLHLAMHDYPPLVSGALHLL 150


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 535 GGRSYCRILINNSLFHAPSQ*LAALYCL 452
           GGR++ R+L++ ++   P     AL+ L
Sbjct: 91  GGRTFLRVLLHLAMHDYPPLVSGALHLL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,137
Number of Sequences: 438
Number of extensions: 3268
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)