Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1896
         (586 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.20 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.47 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   3.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   7.7  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 23  NLNKCVCNRGWTGPDCS-QHDALPPSP 100
           N  +C+C  GW G  C+   D   P+P
Sbjct: 88  NAFQCICKEGWEGALCNINTDDCSPNP 114



 Score = 25.4 bits (53), Expect = 0.36
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 32  KCVCNRGWTGPDCSQHDA 85
           +C C  GW G  CS  D+
Sbjct: 129 ECNCKNGWKGKTCSLKDS 146



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +2

Query: 11  GICSNL----NKCVCNRGWTGPDCSQH 79
           G C NL    ++C C  G+TG  C ++
Sbjct: 42  GHCVNLPGVGHRCQCQPGFTGKYCHEN 68


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 23  NLNKCVCNRGWTGPDC 70
           N  +C+C  GWTG  C
Sbjct: 119 NQYQCLCGVGWTGKVC 134



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  CVCNRGWTGPDCSQH 79
           C C  G+TG DC ++
Sbjct: 85  CHCPYGYTGKDCGEY 99



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 35 CVCNRGWTGPDC 70
          C C  G+TG +C
Sbjct: 47 CTCKPGFTGSNC 58


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +2

Query: 92  PSPTPYVPENATKAAYNMTKKETPYGESIP-VSEP 193
           P P  +VPE +T      T   T      P VS P
Sbjct: 431 PKPGQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNP 465


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 341 VYLVVTFNNIFT---VSKKRLNYGPSVDKWLPKYVSKNFNQFASFRLQFSKLEV 189
           VYL + FN +FT   V+   +N   S+D+   KY+ +   +      + + +EV
Sbjct: 309 VYLAIVFNGLFTEEDVADVPINVTLSLDE--KKYILQEVVRVKKPHYELNMVEV 360


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 186 DTGMDSPYGVSFLVMLYAAFVAFSG 112
           D GM  PY   + VM +     F+G
Sbjct: 280 DAGMSGPYTKGYGVMGFNEICEFTG 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,120
Number of Sequences: 336
Number of extensions: 2884
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)