Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1896
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    28   1.2  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   2.0  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   2.7  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   3.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   4.7  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   8.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.1  

>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 344 ITFKSTSESNNKIHCIQYLQKVSQMLKFGKENERTTNVRTD*L-IFIFSGYSYEFLLIF 517
           I  + +S + N+  CI   ++  Q+LK     +   NV+ D L IF++  ++  FL+IF
Sbjct: 449 ILHRPSSSTENRRICINAAREAVQLLKNRLNIDLRVNVKADPLWIFLYCPFT-PFLIIF 506


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 89  PPSPTPYVPENATKAAYNMTKKETPYGESIPVSEPLV*KIA 211
           P  P P VP+N +        K+  +   +P S P V K++
Sbjct: 271 PVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVS 311


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 29  NKCVCNRGW--TGPDCSQHDALPPSPTPYVPENATKAAYN 142
           +KC   R +  T PD S+H      PTP  P NA    +N
Sbjct: 240 SKCSFERRFARTVPDASRHPYPDRLPTPLTPSNAHWVVHN 279


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 77  HDALPPSPTPYVPENATKAAYNMTKKETPYGESIP 181
           H  L P PTP     +T ++Y     ++  GES+P
Sbjct: 216 HKLLEPLPTPIPSLPSTPSSYQNLPSQSLTGESLP 250


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 185 ILGWTHHTVFPFWS 144
           I  W HHT  PFW+
Sbjct: 32  IFTWDHHTARPFWT 45


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 398 LQKVSQMLKFGKENERTTNVRTD*LIFIFSGYSYEFLLIFPL 523
           L KV ++ KF  +NE  +    D  IF+   Y++  L +  L
Sbjct: 85  LPKVDRVSKFLSDNESISQTSGDYFIFLQRFYAHAILFVMEL 126


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 320 NNIFTVSKKRLNYG--PSVDKWLPKYVSKNFNQ 228
           NN+  + KK LN    PS D W  +Y +  + Q
Sbjct: 356 NNLALMKKKELNLNFLPSFDVWDREYYTARYKQ 388


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 179 GWTHHTVFPFWS 144
           GW HH++F  WS
Sbjct: 197 GWAHHSIFLDWS 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,356
Number of Sequences: 5004
Number of extensions: 46233
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)