Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1896
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 33 0.22
04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953... 29 2.1
07_03_1432 - 26508135-26508881,26509301-26509708 29 3.6
01_05_0476 - 22575586-22575817,22575985-22576098,22576165-225762... 29 3.6
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 6.3
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 28 6.3
04_04_0234 - 23805383-23805502,23805652-23805733,23805820-238060... 27 8.3
01_06_0506 + 29887343-29887686,29889965-29890265,29890385-298906... 27 8.3
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 2 SARGICSNLNKCVCNRGWTGPDCS 73
+ GIC C C GWTG DCS
Sbjct: 573 TGHGICKANGICECESGWTGIDCS 596
>04_03_0271 -
13694669-13694770,13694859-13694999,13695258-13695370,
13696253-13696304,13696538-13696660,13696985-13697091,
13697280-13697329,13698284-13698387,13698610-13698690,
13698829-13698913,13699370-13699446,13700587-13700676,
13701338-13701397,13701768-13701872,13701986-13702035,
13702174-13702280,13704735-13704805,13704916-13705144,
13705228-13705704,13705807-13706405
Length = 940
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 101 TPYVPENATKAAYNMTKKETPYGESIPVSEPLV*KIANGTMQID*SSSI 247
TP+ +N K YN+ K+ + SIPVS ++ +G +Q D S+ I
Sbjct: 834 TPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAK-QLIHGLLQRDPSNRI 881
>07_03_1432 - 26508135-26508881,26509301-26509708
Length = 384
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 86 LPPSPTPYVPENATKAAYNMTKKETPYGESIPVSEPLV 199
LPPSPTP P A+ + ++ + Y S P +E +V
Sbjct: 70 LPPSPTPPSPAPASPSPPSLGLRVGYYSSSCPKAEQIV 107
>01_05_0476 -
22575586-22575817,22575985-22576098,22576165-22576249,
22576337-22576855,22577846-22577924
Length = 342
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 374 NKIHCIQYLQKVSQMLKFGKEN 439
NK+ I LQKVS+ L FG EN
Sbjct: 215 NKVILISCLQKVSRTLSFGSEN 236
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 62 PDCSQHDALPPSPTPYVPENATKA 133
PDC H ALPP P P +A
Sbjct: 35 PDCGTHQALPPELMPPPPPRPRRA 58
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 SARGICSNLNKCVCNRGWTGPDCSQ-HDALPPSPTPYVPENATKAAYNMTKKETPYGESI 178
S R ++ + C P+ S + + P P P VPEN++ Y++ G+ +
Sbjct: 40 SRRSFSTSASSSPCTSPPAPPETSPPNTSTPAPPAPDVPENSSPPDYDLCSDRCSLGDML 99
Query: 179 PVS 187
S
Sbjct: 100 EAS 102
>04_04_0234 -
23805383-23805502,23805652-23805733,23805820-23806088,
23806384-23806524,23806751-23806936,23807186-23807422,
23807505-23807720,23807816-23808146,23808257-23808369,
23808691-23808996,23809078-23809187,23810226-23810363,
23811230-23811497
Length = 838
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 19 FQPKQVRLQPRLDGSRLFTARRPPALAD-PLRTRERHESSI 138
F P Q L PR GS + +R PP A + R+ +E+SI
Sbjct: 200 FPPFQPSLLPRTKGSAVIPSRLPPRRAKLTVYNRQSNETSI 240
>01_06_0506 +
29887343-29887686,29889965-29890265,29890385-29890677,
29890783-29891069,29891171-29891400
Length = 484
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 35 CVCNRGWTGPDCS 73
C CNR ++GPDCS
Sbjct: 91 CECNRCFSGPDCS 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,780
Number of Sequences: 37544
Number of extensions: 275311
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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