Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1896
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.034
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.96 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   3.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   3.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   3.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   3.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 0.034
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 98   PTPYVPENATKAAYNMTKKETPYGESIPVSEPLV 199
            PT Y+ E++ K  Y   +KE P+ E + V+  L+
Sbjct: 977  PTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELI 1010


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 92  PSPTPYVPENATKAAYNMTKK 154
           P  TPY  +N+T A ++ T K
Sbjct: 421 PERTPYQWDNSTSAGFSQTNK 441


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 386 NGSYYCFQRYF 354
           NGS YCF R F
Sbjct: 4   NGSLYCFARLF 14


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 543 ANYTIVSRGNINRNSYE*PENININ 469
           +NY   +  N N N+Y+  +  NIN
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 543 ANYTIVSRGNINRNSYE*PENININ 469
           +NY   +  N N N+Y+  +  NIN
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 543 ANYTIVSRGNINRNSYE*PENININ 469
           +NY   +  N N N+Y+  +  NIN
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 543 ANYTIVSRGNINRNSYE*PENININ 469
           +NY   +  N N N+Y+  +  NIN
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNIN 116


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 311 FTVSKKRLNYGPSVDKWLPKYVSKNFN 231
           F++ K  L+Y     + LPKY ++  N
Sbjct: 418 FSIYKTILDYYHKYKENLPKYTTEELN 444


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 311 FTVSKKRLNYGPSVDKWLPKYVSKNFN 231
           F++ K  L+Y     + LPKY ++  N
Sbjct: 418 FSIYKTILDYYHKYKENLPKYTTEELN 444


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 227 FASFRLQFSKLEVPILGWTH 168
           F  F   F+  +V +LGW H
Sbjct: 280 FQHFLDSFAGSDVTVLGWGH 299


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 311 FTVSKKRLNYGPSVDKWLPKYVSKNFN 231
           F++ K  L+Y     + LPKY ++  N
Sbjct: 44  FSIYKTILDYYHKYKENLPKYTTEELN 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,014
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)