Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1895
         (604 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.49 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 205 LIQKPFDSRSRVRGSVP 155
           LI+K FDSRSR   S P
Sbjct: 735 LIEKSFDSRSRQNSSFP 751


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 370 TSLFHHLLNSSALIFLSRQSRIQLDTTKRSVIFAWQFGIQVPV 242
           T ++  L+N SA        +       +SV FA+   + VPV
Sbjct: 130 TGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSVPV 172


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 370 TSLFHHLLNSSALIFLSRQSRIQLDTTKRSVIFAWQFGIQVPV 242
           T ++  L+N SA        +       +SV FA+   + VPV
Sbjct: 363 TGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSVPV 405


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 370 TSLFHHLLNSSALIFLSRQSRIQLDTTKRSVIFAWQFGIQVPV 242
           T ++  L+N SA        +       +SV FA+   + VPV
Sbjct: 363 TGIWVWLINISATYICYAFGKFSCKVMIQSVSFAFPINLSVPV 405


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,211
Number of Sequences: 336
Number of extensions: 2764
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)