Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1895
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   2.1  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    27   2.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.8  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   3.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   4.9  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   4.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.5  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 403 FA*HSMDVHCGTSLFHHLLNSSALIFLSRQSRIQL 299
           F   S  VHC  +LF  L  + ++IF +  +R++L
Sbjct: 262 FVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVEL 296


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 217 FAAFLIQKPFDSRSRVRGSVPTPAVGLEIFRIIIEHFVRALS 92
           +  F+++ P    + V  S     +  EIFRI ++ FVR LS
Sbjct: 114 YVEFVVKHPL--YTHVPPSAEEGGINCEIFRITLDRFVRTLS 153


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 367 SLFHHLLNSSALIFLSRQSRIQLDTTKRSVI-FAWQFGIQV 248
           S FH+ +  + L FL   S++++D    SV+  AW  GIQ+
Sbjct: 400 SAFHYSIYRALLRFLGMDSKMEIDFDVSSVLTTAWN-GIQI 439


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 LNKERGEGSSEPLIGNGNLYPKLPSEDDAS 286
           L  ER + + E ++   N  P++PS DDAS
Sbjct: 26  LGAEREKEAVERIVQEENQNPEVPSNDDAS 55


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 279 SSSLGSLGYKFPLPISGSELP 217
           SS + S+ Y F  PISGS  P
Sbjct: 374 SSEISSIIYNFSTPISGSSFP 394


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 371 HKPLPPPPQQLR-SHIPQPAEQ 309
           H PLPPPP   +  +IP P +Q
Sbjct: 16  HNPLPPPPFPPKLINIPNPVKQ 37


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
 Frame = -1

Query: 367 SLFHHLLNSSALIFLSRQSRIQLDTTK--RSVIFAWQFGIQVPVAYQRLGAPFAAFLIQK 194
           S   H L++ + +     +   +DT+   R V+F+    I VP  Y R  +   +  IQ+
Sbjct: 283 SYTRHFLSTCSNVLGLETTSTHIDTSDGFRVVVFSSHVSIDVPRVYSRCNSKPVSLKIQQ 342

Query: 193 -----PFDSRSRVRGSVPTPAVG----LEIFRIIIEHF 107
                P D +  V     T A G    L  FR ++ HF
Sbjct: 343 LKSLYPSDKKLIVGRDQLTKACGVTHKLRAFRELLIHF 380


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 371 HKPLPPPPQQLRSHIP 324
           HKPLP PP Q+ +  P
Sbjct: 720 HKPLPRPPVQVETREP 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,053
Number of Sequences: 5004
Number of extensions: 46467
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)