Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1895
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 31 0.70
01_06_1442 + 37396505-37396960 31 0.70
06_03_1218 - 28488661-28488757,28488924-28488988,28489352-284894... 30 1.2
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 30 1.2
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 30 1.6
01_01_0499 - 3675303-3675484,3676888-3676982,3677046-3677096,367... 29 3.7
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 28 5.0
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 28 5.0
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 28 5.0
11_06_0692 + 26327487-26328509 28 6.5
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 28 6.5
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644... 28 6.5
09_04_0758 - 19973797-19974651 27 8.7
02_05_0201 + 26687369-26689228 27 8.7
02_02_0607 - 12088810-12089105,12089200-12090208 27 8.7
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 246 PLPISGSELPSPRSLFKNPLTAAAAFAVLCQPQP 145
P+P+S S L LF+N TA AA A +P+P
Sbjct: 23 PVPVSSSSLLPASPLFQNIATATAAAAAARRPRP 56
>01_06_1442 + 37396505-37396960
Length = 151
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 270 AKMTLRLVVSSCILLCRLRNMRAELLRRWWKR 365
A+M L L +++ +++ L + A L+RRWW+R
Sbjct: 5 ARMVLALALTAGVIVALLSLLVAVLVRRWWRR 36
>06_03_1218 -
28488661-28488757,28488924-28488988,28489352-28489448,
28489647-28489852,28489853-28490152
Length = 254
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 117 LNISSEHFHKTISRCNTSALKRV*ASNA 34
+NISS FH+TIS +T +K + A NA
Sbjct: 102 MNISSNFFHRTISISSTEMMKNLVALNA 129
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 452 IRSRCLAEG-RLFEDPEFPAVDRSLY---YKESLDRPIT--WLRPGEIS 580
+R +A+G R F D EFP DRSL+ SL + W+RP +I+
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIA 1675
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 368 KPLPPPPQQLRSHIPQP 318
KP PPPPQQ RS P P
Sbjct: 41 KPQPPPPQQPRSQPPPP 57
>01_01_0499 -
3675303-3675484,3676888-3676982,3677046-3677096,
3677191-3677270,3677423-3677593,3677836-3677937,
3678092-3678244,3678392-3678523,3678702-3678788,
3678987-3679126,3679246-3679660
Length = 535
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 312 AGYN-LTPLNEASSSLGSLGYKFPLPISGSELPSPRSLFKNPLTAAAAFA 166
AG+N TPL A S GS+G+ L SG++ P L + P+ AA A
Sbjct: 222 AGFNGATPLLLACSRTGSIGFIKCLVESGADPNIPDELDRLPIEIAAIHA 271
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 413 TGGFRLA*HGRSLRHKPLPPPPQQLR 336
+GG R GR KP PPPP QLR
Sbjct: 22 SGGGRRKKAGRRGEAKPPPPPPPQLR 47
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 246 PLPISGSELPS--PRSLFKNPLTAAAAFAVLCQPQP 145
P+P S ++ PS L +NP TAAAA A + +P
Sbjct: 528 PVPESATDFPSLLEHELNRNPWTAAAATATASEHEP 563
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 410 PSSFGPATYQDFKDIRSRCLAEGRLFEDPE---FPAVDRSLYYKESLDRPITWLRPGEIS 580
P S P + F D R+ C G L F +DR+L K + + ++ G++
Sbjct: 69 PESILPPSANSFGD-RNNCPVPGTLLNTNNMRGFQNLDRALLLKAEAKKILHDIKSGKVE 127
Query: 581 DNPQLFV 601
+NP L +
Sbjct: 128 ENPALLL 134
>11_06_0692 + 26327487-26328509
Length = 340
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 252 KFPLPISGSELPSPRSLFKN-PLTAAAAFAVLCQPQPLA 139
+FP P S + + S LF N + A A+L QPQPLA
Sbjct: 81 RFPSP-SAAAMSSADELFHNGQIRAVRLSAMLLQPQPLA 118
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 383 RSLRHKPLPPPPQQLRSHIPQPAEQDXXXXXXTKRH 276
RSL H+P PPP + +P P K+H
Sbjct: 386 RSLPHQPTPPPSPSQQPTLPAPQPVQASPTSPPKQH 421
>07_03_0056 -
12863599-12863715,12864107-12864235,12864322-12864408,
12864657-12864848,12864930-12865106,12865174-12865420,
12865510-12865619,12865751-12865851,12865937-12866000,
12866433-12866522,12866621-12866719,12866817-12866897,
12867197-12867535
Length = 610
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 398 GETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPEFPAVDRSLYY 529
G+T P +GP T D++D + R CL E P ++ S Y+
Sbjct: 176 GKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYF 220
>09_04_0758 - 19973797-19974651
Length = 284
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 240 PISGSELPSPRSLFKNPLTAAAAFAVL 160
P S PSP S+F AAAA AVL
Sbjct: 7 PCSSFSPPSPSSMFSTGAAAAAAHAVL 33
>02_05_0201 + 26687369-26689228
Length = 619
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 371 HKPLPPPPQQLRSHIPQPAEQDXXXXXXTKRHLRL 267
H+P PPPPQ LR +P P Q + H ++
Sbjct: 9 HRP-PPPPQSLRL-VPPPPPQPPPPPLTYRHHCKV 41
>02_02_0607 - 12088810-12089105,12089200-12090208
Length = 434
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 507 AGNSGSSKSLPSARHRDLMSLKS*YVAGPNDDGRVSPSI 391
+ +S SS S HR ++ S Y G +D+G V P++
Sbjct: 8 SSSSSSSSSSTHHHHRHVVHHASTYFDGDDDEGDVKPAV 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,514
Number of Sequences: 37544
Number of extensions: 371780
Number of successful extensions: 1638
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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