Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1895
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain fami... 73 1e-13
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 66 1e-11
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 66 1e-11
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 66 1e-11
AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain famil... 63 1e-10
AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain famil... 62 3e-10
AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain famil... 62 3e-10
AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical ... 57 8e-09
Z82277-1|CAB05248.1| 648|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U12921-1|AAB60256.1| 648|Caenorhabditis elegans sex determinati... 49 3e-06
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 31 0.84
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 29 3.4
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 28 5.9
>AC024214-10|AAF36080.1| 778|Caenorhabditis elegans Calpain family
protein 7 protein.
Length = 778
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +2
Query: 440 DFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFV 601
+F+ R RCL + LFEDP+FPA D SLYYK D PI W RPGEI +NPQL V
Sbjct: 296 NFQQERQRCLDQRCLFEDPQFPANDSSLYYKTRPDEPIIWKRPGEIYENPQLIV 349
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 410 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDN 586
P S P T QDF ++R +CL RLFEDP+F A D SL++ + + + WLRPGEI+
Sbjct: 245 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRPPKRVEWLRPGEITRE 304
Query: 587 PQLFVE 604
PQL E
Sbjct: 305 PQLITE 310
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 410 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDN 586
P S P T QDF ++R +CL RLFEDP+F A D SL++ + + + WLRPGEI+
Sbjct: 270 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRPPKRVEWLRPGEITRE 329
Query: 587 PQLFVE 604
PQL E
Sbjct: 330 PQLITE 335
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 410 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDN 586
P S P T QDF ++R +CL RLFEDP+F A D SL++ + + + WLRPGEI+
Sbjct: 291 PISPRPTTEPQDFYELRDQCLESKRLFEDPQFLANDSSLFFSKRPPKRVEWLRPGEITRE 350
Query: 587 PQLFVE 604
PQL E
Sbjct: 351 PQLITE 356
>AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain family
protein 6 protein.
Length = 790
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +2
Query: 443 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFV 601
F + R +CL E RLFEDP+FPA + S+YYK+ I WLRP +I NP+L V
Sbjct: 144 FYEERQKCLDENRLFEDPQFPANNSSIYYKKPPKSHIVWLRPAKIFANPRLIV 196
>AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain family
protein 4, isoform b protein.
Length = 603
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/55 (52%), Positives = 33/55 (60%)
Frame = +2
Query: 440 DFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVE 604
DF+ R +CL LFEDPEFPA SLYY+ I W RPGEI NPQL +
Sbjct: 226 DFETEREKCLRNKTLFEDPEFPATAASLYYRTPPRDRIIWKRPGEIIANPQLITQ 280
>AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain family
protein 4, isoform a protein.
Length = 716
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/55 (52%), Positives = 33/55 (60%)
Frame = +2
Query: 440 DFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVE 604
DF+ R +CL LFEDPEFPA SLYY+ I W RPGEI NPQL +
Sbjct: 226 DFETEREKCLRNKTLFEDPEFPATAASLYYRTPPRDRIIWKRPGEIIANPQLITQ 280
>AL132848-5|CAB60389.2| 702|Caenorhabditis elegans Hypothetical
protein Y47H10A.1 protein.
Length = 702
Score = 57.2 bits (132), Expect = 8e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +2
Query: 443 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQL 595
F + R +CL E RLFEDP+FPA + S+Y K I W RPGE+ NP+L
Sbjct: 202 FHEERQKCLDEKRLFEDPQFPANNSSIYVKVRPKDHIVWKRPGELFANPRL 252
>Z82277-1|CAB05248.1| 648|Caenorhabditis elegans Hypothetical
protein LLC1.1 protein.
Length = 648
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 437 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVE 604
Q+++ +R C+ + + F D FP ++SL+ ++ I W RPGE+ +P LFVE
Sbjct: 13 QNYEKLRKICIKKKQPFVDTLFPPTNQSLFLEQRQSSDIVWKRPGELHPDPHLFVE 68
>U12921-1|AAB60256.1| 648|Caenorhabditis elegans sex determination
protein.
Length = 648
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 437 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVE 604
Q+++ +R C+ + + F D FP ++SL+ ++ I W RPGE+ +P LFVE
Sbjct: 13 QNYEKLRKICIKKKQPFVDTLFPPTNQSLFLEQRQSSDIVWKRPGELHPDPHLFVE 68
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 116 NYYPKNFKANGWGWHRTANAAAAVKGFLNKERGEGSSEPLIGNGNLYPKLPSEDDA 283
NY+ K + +G+H + NA K +N+ + +GS L + N P + DA
Sbjct: 31 NYHGKGHLPDSFGYHHSPNAPDDSKSSINRPKTQGSPR-LTPDSNRAPHIAVSQDA 85
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -3
Query: 374 RHKPLPPPPQQ--LRSHIPQPAEQ 309
+ K PPPPQQ + SH P P EQ
Sbjct: 898 KKKLTPPPPQQAPVTSHTPPPVEQ 921
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 386 GRSLRHKPLPPPPQQLRSHIPQPAEQDXXXXXXTKRHLRLAV 261
G +LR +P PP ++H+ PAE +H+R V
Sbjct: 460 GENLRRRPAPPK----QNHVASPAEDQLDTSVWKSKHIRTDV 497
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 111 CSIIIRKISRPTAGVG 158
CS++ +K++RPT GVG
Sbjct: 754 CSVVAKKLNRPTYGVG 769
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,453
Number of Sequences: 27780
Number of extensions: 279785
Number of successful extensions: 1109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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