Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1894
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    28   3.4  
07_03_1705 + 28848293-28848321,28848766-28848841,28848940-288490...    28   4.5  
05_01_0261 + 2001512-2001751,2001861-2002619                           27   5.9  
01_03_0085 + 12310675-12311354,12311475-12311579,12311755-123118...    27   7.8  

>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 397  FCDYIFELKYNNPHNGISTISCCNKI*RNL 308
            FCD I +++ NNPH     +   + I R+L
Sbjct: 1212 FCDIISQVQQNNPHEDCKELELIDNIRRHL 1241


>07_03_1705 +
           28848293-28848321,28848766-28848841,28848940-28849082,
           28849297-28849383,28849492-28849575,28850224-28850380,
           28850521-28850606,28850995-28851226,28851351-28851471,
           28851610-28851746,28852086-28852202,28852612-28852660,
           28852751-28852793,28852945-28853116,28853192-28853262,
           28853365-28853458,28853608-28853820,28853851-28853859,
           28853895-28853999,28854266-28854586,28854664-28854789
          Length = 823

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 337 LLLKYRYADYYILIQKYSHKKKKQYNTFGGSSVTNPGKK 453
           ++ +YR+ +  +LI  Y++ K+  ++TF   SV+  G K
Sbjct: 423 IISEYRFVNAVLLINGYNYLKETVHDTFRSISVSPNGYK 461


>05_01_0261 + 2001512-2001751,2001861-2002619
          Length = 332

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 141 GVIGRDRRSRTRRCP-VTSCDDIRA 70
           GVI R +R   RRCP V SC DI A
Sbjct: 113 GVIDRAKRVVERRCPGVVSCADIVA 137


>01_03_0085 +
           12310675-12311354,12311475-12311579,12311755-12311877,
           12312206-12312376,12312472-12312601,12313003-12313058,
           12313602-12313704,12313705-12313914,12314122-12314253
          Length = 569

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 301 LSVSFAKFCCNNLLLKYRYADYYILIQKYSHKKKKQ 408
           +SV F KFC  ++LLK   AD  +     S  K+K+
Sbjct: 404 ISVPFQKFCYYSILLKLTSADCCLSPVNGSFNKRKE 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,986,973
Number of Sequences: 37544
Number of extensions: 194532
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)