Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1894
         (477 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018666-1|AAH18666.1|  391|Homo sapiens RNA binding motif and E...    33   0.51 
BC001942-1|AAH01942.1|  391|Homo sapiens RNA binding motif and E...    33   0.51 
AC062037-2|AAY24127.1|  391|Homo sapiens unknown protein.              33   0.51 
BC010991-1|AAH10991.1|  381|Homo sapiens RBED1 protein protein.        33   0.68 
AK025630-1|BAB15195.1|  381|Homo sapiens protein ( Homo sapiens ...    33   0.68 
BC112324-1|AAI12325.1|  381|Homo sapiens RBED1 protein protein.        31   2.1  

>BC018666-1|AAH18666.1|  391|Homo sapiens RNA binding motif and
           ELMO/CED-12 domain 1 protein.
          Length = 391

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 101 HLRVRDLRSRPMTPECDRMLHATYVLRKYYSAWLLWLPQSGNAFRIEGCDSGYILSDCIL 280
           H+ ++ LR   ++ EC+R      V+  +Y+A  L L       R    DSG++L   + 
Sbjct: 259 HIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKGVLF 318

Query: 281 *LKR 292
            L R
Sbjct: 319 LLGR 322


>BC001942-1|AAH01942.1|  391|Homo sapiens RNA binding motif and
           ELMO/CED-12 domain 1 protein.
          Length = 391

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 101 HLRVRDLRSRPMTPECDRMLHATYVLRKYYSAWLLWLPQSGNAFRIEGCDSGYILSDCIL 280
           H+ ++ LR   ++ EC+R      V+  +Y+A  L L       R    DSG++L   + 
Sbjct: 259 HIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKGVLF 318

Query: 281 *LKR 292
            L R
Sbjct: 319 LLGR 322


>AC062037-2|AAY24127.1|  391|Homo sapiens unknown protein.
          Length = 391

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 101 HLRVRDLRSRPMTPECDRMLHATYVLRKYYSAWLLWLPQSGNAFRIEGCDSGYILSDCIL 280
           H+ ++ LR   ++ EC+R      V+  +Y+A  L L       R    DSG++L   + 
Sbjct: 259 HIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKGVLF 318

Query: 281 *LKR 292
            L R
Sbjct: 319 LLGR 322


>BC010991-1|AAH10991.1|  381|Homo sapiens RBED1 protein protein.
          Length = 381

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 101 HLRVRDLRSRPMTPECDRMLHATYVLRKYYSAWLLWLPQSGNAFRIEGCDSGYILSD 271
           H+ ++ LR   ++ EC+R      V+  +Y+A  L L       R    DSG++L +
Sbjct: 259 HIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKE 315


>AK025630-1|BAB15195.1|  381|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21977 fis, clone HEP05976. ).
          Length = 381

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 101 HLRVRDLRSRPMTPECDRMLHATYVLRKYYSAWLLWLPQSGNAFRIEGCDSGYILSD 271
           H+ ++ LR   ++ EC+R      V+  +Y+A  L L       R    DSG++L +
Sbjct: 259 HIAIQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKE 315


>BC112324-1|AAI12325.1|  381|Homo sapiens RBED1 protein protein.
          Length = 381

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 101 HLRVRDLRSRPMTPECDRMLHATYVLRKYYSAWLLWLPQSGNAFRIEGCDSGYILSD 271
           H+ ++ LR   ++ EC+R      V+  +Y+   L L       R    DSG++L +
Sbjct: 259 HIAIQALREECLSRECNRQQKVIPVVNSFYATTFLHLAHVWRTQRKTISDSGFVLKE 315


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,517,586
Number of Sequences: 237096
Number of extensions: 1047539
Number of successful extensions: 1824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)