Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1894
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084155-2|AAG23363.2|  167|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    27   5.3  
Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC084155-2|AAG23363.2|  167|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.5 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 352 RYADYYILIQKYSHKKKKQYNTFGGSSVTN 441
           R+ + Y  + + SHKKKK+ N  G  SV N
Sbjct: 104 RFRECYDKLHELSHKKKKKKNGTGKFSVKN 133


>Z69361-1|CAE17943.1|  468|Caenorhabditis elegans Hypothetical
           protein T13H10.2 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 451 FSRGLSHLNHRMCYIVFFFCDYIFELKYNNPHNG 350
           FS  L  LN+ +C I+F+F  ++F + Y+  + G
Sbjct: 34  FSIPLHTLNYFLCVIIFYF--FVFTIFYHERYGG 65


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 346 KYRYADYYILIQKYSHKKKKQYNTFGG 426
           K + ADYY    K   K  KQ+ T GG
Sbjct: 500 KKQMADYYATAHKIKEKVVKQHTTMGG 526


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 346 KYRYADYYILIQKYSHKKKKQYNTFGG 426
           K + ADYY    K   K  KQ+ T GG
Sbjct: 500 KKQMADYYATAHKIKEKVVKQHTTMGG 526


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 346 KYRYADYYILIQKYSHKKKKQYNTFGG 426
           K + ADYY    K   K  KQ+ T GG
Sbjct: 500 KKQMADYYATAHKIKEKVVKQHTTMGG 526


>Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical
           protein C17E4.6 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 417 IRWFKCDKPREKNL 458
           I+ FKC++PRE+NL
Sbjct: 278 IKTFKCERPRERNL 291


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 409 IVFFFCDYIFELKYNNPHNGISTISCCNKI*RNLHLVL 296
           I+F  CDY   + YN  + G +  SC     R L L++
Sbjct: 145 ILFAICDYHLNVSYNCVNVGCAMNSCFRLYFRPLKLII 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,938,936
Number of Sequences: 27780
Number of extensions: 187431
Number of successful extensions: 491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)