Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1894
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   5.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   5.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   5.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   6.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   6.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -3

Query: 454 FFSRGLSHLNHRMCYIVFFFCDYIFELKYN 365
           +F+RGL   ++ +CY ++ +   +F + Y+
Sbjct: 206 YFNRGLLSASYLVCYGIWVYFVPLFLIIYS 235


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -3

Query: 454 FFSRGLSHLNHRMCYIVFFFCDYIFELKYN 365
           +F+RGL   ++ +CY ++ +   +F + Y+
Sbjct: 82  YFNRGLLSASYLVCYGIWVYFVPLFLIIYS 111


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 YYVNTTQHGSYGYRKVVMHF 233
           YYVNT Q  +  Y++  +H+
Sbjct: 276 YYVNTEQFRTSDYQQNDIHY 295


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 YYVNTTQHGSYGYRKVVMHF 233
           YYVNT Q  +  Y++  +H+
Sbjct: 276 YYVNTEQFRTSDYQQNDIHY 295


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 YYVNTTQHGSYGYRKVVMHF 233
           YYVNT Q  +  Y++  +H+
Sbjct: 276 YYVNTEQFRTSDYQQNDIHY 295


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 254 HCRTLQSEMH 225
           +C TLQSE+H
Sbjct: 35  NCETLQSEVH 44


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 254 HCRTLQSEMH 225
           +C TLQSE+H
Sbjct: 35  NCETLQSEVH 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,193
Number of Sequences: 438
Number of extensions: 2350
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)