Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1889
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 286 2e-78
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 151 1e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 142 3e-35
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 115 6e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 88 8e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 86 3e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 82 5e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 4e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 34 0.014
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.033
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.31
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.94
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 27 2.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.0
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 6.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 286 bits (702), Expect = 2e-78
Identities = 139/177 (78%), Positives = 148/177 (83%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 262 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQ 441
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEA LNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 442 IMFETFNTPAMYVAIQAVLSLVRVRSYHPYRAGLPATVSSTPVPIYQKDTHFPHAIL 612
I+FETFN PA YVAIQAVLSL V+ T VPIY+ PHAI+
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT-VPIYE-GYALPHAIM 176
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 151 bits (365), Expect = 1e-37
Identities = 68/136 (50%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 280 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEASLNPKANREKMTQIMFET 456
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE L N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 457 FNTPAMYVAIQAVLSL 504
N PA+ ++Q VL+L
Sbjct: 132 LNVPALSFSLQPVLAL 147
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 142 bits (345), Expect = 3e-35
Identities = 68/141 (48%), Positives = 98/141 (69%), Gaps = 2/141 (1%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 261
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 262 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQ 441
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE +NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 442 IMFETFNTPAMYVAIQAVLSL 504
MFE + +YVAIQAVLSL
Sbjct: 122 TMFERYGFGGVYVAIQAVLSL 142
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 115 bits (276), Expect = 6e-27
Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 24/159 (15%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 228
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 229 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 387
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 388 LLTEASLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 504
LLTE LNP NRE +IMFE+FN +Y+A+QAVL+L
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLAL 165
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 88.2 bits (209), Expect = 8e-19
Identities = 49/135 (36%), Positives = 73/135 (54%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 264
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 265 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQI 444
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 445 MFETFNTPAMYVAIQ 489
MFE+ PA Y+A Q
Sbjct: 121 MFESLRCPATYLAKQ 135
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 86.2 bits (204), Expect = 3e-18
Identities = 44/135 (32%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 280 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQIMFET 456
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 457 FNTPAMYVAIQAVLS 501
+N P++ I + S
Sbjct: 142 YNAPSVAYGIDGLFS 156
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.2 bits (194), Expect = 5e-17
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 264
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 265 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMT 438
I + +K +GI+ +W+ W +L+V P E+ +++TE S NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 439 QIMFETFNTPAMYVAIQAV 495
+ FE + PA Y+ QAV
Sbjct: 122 EAAFEQLHVPAFYLTKQAV 140
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +1
Query: 286 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEASLNPKANREKMTQIMFE 453
PI+ G V +W+ ++ W H Y+ L P + +PV L + +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 454 TFNTPAMYVAIQAVLSLVRVRSYH 525
P +A + ++ L + H
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILH 195
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 34.3 bits (75), Expect = 0.014
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 279
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 280 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEASLNPKANREKMTQIM 447
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 448 FETFNTPA 471
FE F A
Sbjct: 118 FEEFQFDA 125
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 33.1 bits (72), Expect = 0.033
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 346 FYNELRVAPEEHPVLLTE--ASLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLVRVRS 519
+Y L E+HP+LLT+ A+L P+ + ++ +I ++ NTP + + A+ L
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
Query: 520 YHPY 531
H Y
Sbjct: 1459 NHAY 1462
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 288
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 242 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 81
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.94
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -2
Query: 282 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/89 (22%), Positives = 40/89 (44%)
Frame = +1
Query: 268 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQIM 447
+L K + I ++D+ K + +E V + LL E LN +ANR MT+ +
Sbjct: 188 LLNHKSQVAEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLN-RANRSVMTRYI 246
Query: 448 FETFNTPAMYVAIQAVLSLVRVRSYHPYR 534
N M + ++ ++ ++H ++
Sbjct: 247 SSAENLKLMMILLRDKSKNIQFEAFHVFK 275
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 245 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 129
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 282 FEGQDTSFALCLISYIRVLLSHTDHHA 202
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 433 MTQIMFETFNTPAMYVAIQAVLSLVRVRSYHPYRAGLPATVSSTPVPIYQKDTHFPHAIL 612
MTQ M E + A +AI+ + YR G V + P+PI + T+ P ++
Sbjct: 1489 MTQRMLEDSSANAAVIAIRDDVGF----KIAAYRTGELNEVFAPPMPITEDQTYVPSRVI 1544
Query: 613 AF 618
+
Sbjct: 1545 NY 1546
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 543 KSSTIRVVRPNAYKREHGLNGDVH 472
K +T +V R N YK + +NG V+
Sbjct: 386 KDATSKVYRSNTYKPKSSVNGSVY 409
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 205 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 291
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,961
Number of Sequences: 5004
Number of extensions: 62068
Number of successful extensions: 182
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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