Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1885
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3YD78 Cluster: Response regulator; n=1; Marinomonas sp...    35   1.7  
UniRef50_Q57V16 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_P28938 Cluster: Alpha trans-inducing protein; n=6; Vari...    33   7.0  

>UniRef50_A3YD78 Cluster: Response regulator; n=1; Marinomonas sp.
           MED121|Rep: Response regulator - Marinomonas sp. MED121
          Length = 264

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = -2

Query: 610 KTLYHQ*LRKL*FCGFDFNYTMLFLNRGGKS*IFDKYVFRKIGTRHRDLTPVHRYIQMH 434
           + L HQ   K    G D+N  MLFLN  G + +  +Y+     TR RD  P+ R+I +H
Sbjct: 167 RELSHQDGTKCALSGADYNLLMLFLNNPG-TVLSREYIAE--NTRGRDSAPLDRFIDVH 222


>UniRef50_Q57V16 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 157

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = -1

Query: 479 PPPGFNTGAPLHTNALSYPLGCNDYSC-----RCSNFFSKHP 369
           P P + TG  LH  A+ +P+G   +S      RC N+F  HP
Sbjct: 67  PMPSYGTGRQLHHGAVPFPVGSTSHSIMLLPGRCGNWFFFHP 108


>UniRef50_P28938 Cluster: Alpha trans-inducing protein; n=6;
           Varicellovirus|Rep: Alpha trans-inducing protein -
           Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine
           abortion virus)
          Length = 479

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = -1

Query: 302 IYALSRNRCFACRLRIATPHYARRAAPTPICFIEYYYASTYIAL*PSGDLRAFLLHDLGF 123
           IY +S  R +   LR    HYAR      +  + Y Y S    L  SG   A L+H    
Sbjct: 188 IYVISAQRFYLSELRTREEHYARLLRGYCVALLHYLYGSAKRQLRGSGS-DASLMHKFK- 245

Query: 122 EIAKKKHVWHSGTAAVKHFLSTYAVIIRQ 36
           ++ + ++   +   A   +L  Y  + R+
Sbjct: 246 QVVRDRYYREAANLARLLYLHLYVSVTRE 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,327,453
Number of Sequences: 1657284
Number of extensions: 15397188
Number of successful extensions: 36406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36394
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)