Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1885
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0012 - 20063456-20064601                                         29   4.9  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   6.4  
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164...    28   6.4  
01_05_0797 + 25313226-25313330,25313464-25313545,25317573-253176...    28   6.4  
10_08_0174 - 15424277-15424618,15425125-15425633,15426004-154260...    28   8.5  
08_02_1459 - 27289319-27290440                                         28   8.5  

>09_05_0012 - 20063456-20064601
          Length = 381

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 694 PPPQNRKRHLLLPGRNRQ 641
           PPP+NR RH+ + GR R+
Sbjct: 121 PPPRNRDRHVKVEGRGRR 138


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 187  VHISRCDRAVTCALFYYMILVLK*QKKNTCGTRGLPR*SIFYQL 56
            V IS   RA+   L   +I  L    + T GTR +P   +FY+L
Sbjct: 2721 VSISASKRAINSLLLSRLIEELSGWMETTAGTRAIPIMQLFYRL 2764


>01_07_0303 +
           42615578-42615709,42616273-42616312,42616393-42616477,
           42616634-42616813,42618274-42618354,42618890-42619011,
           42619867-42620723,42621656-42621897,42622107-42622200,
           42622306-42622476,42622695-42622740,42624101-42624111,
           42624141-42624392
          Length = 770

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 582 LRNHWWYSVLCVRTSM*ALPCLFLPGSSKWRFRF*GGGG 698
           L N+WW  +  +   +  +PCLF  G S        GGG
Sbjct: 48  LYNNWWPMLAALMYVLVPMPCLFFGGGSTQFLTSRDGGG 86


>01_05_0797 +
           25313226-25313330,25313464-25313545,25317573-25317660,
           25318298-25318331,25318399-25319243,25319278-25319371,
           25319432-25319611
          Length = 475

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 464 NTGAPLHTNALSYPLGCNDYSCRCSNFFSKHPYK 363
           N G+  H++     LGC+DYSC  ++F     YK
Sbjct: 419 NCGSECHSDEQVMSLGCDDYSCD-NDFVLTEGYK 451


>10_08_0174 -
           15424277-15424618,15425125-15425633,15426004-15426047,
           15427097-15427100,15427646-15427672,15427885-15428371
          Length = 470

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 146 FLLHDLGFEIAKKKHVWH-SGTAA 78
           ++ H +GF + KK H WH +GT++
Sbjct: 343 YINHIIGFGLGKKTHFWHDAGTSS 366


>08_02_1459 - 27289319-27290440
          Length = 373

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 694 PPPQNRKRHLLLPGRNRQ 641
           PPP+NR RH  + GR R+
Sbjct: 71  PPPRNRDRHTKVEGRGRR 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,321,978
Number of Sequences: 37544
Number of extensions: 423876
Number of successful extensions: 1189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)