Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1885
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73969-10|CAE17695.1|   73|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine re...    29   4.4  
U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine re...    28   5.8  

>Z73969-10|CAE17695.1|   73|Caenorhabditis elegans Hypothetical
           protein C12D8.14 protein.
          Length = 73

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 574 IIICVITGGTASCVSARVCKHYPAYF--YREAVNGVFGFEGVGAAIGNY 714
           I +C I    ++        +YP+Y+  Y    NG +G  G+G+A   Y
Sbjct: 12  IAMCSIVQEASAQYYGYASSYYPSYYGGYGYGANGAYGGYGLGSAYAGY 60


>Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical
           protein B0464.9 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 275 FACRLRIATPHYARRAAPTPICFIEY 198
           FACR RIA P ++  A+P     +EY
Sbjct: 333 FACRHRIAQPKFSALASPPDPAILEY 358


>AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine
           receptor, class w protein137 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 311 GLHSLHSYFLYVFISSLSCTGVLKKNYCIYRSSRYSLKDKTV 436
           G+ S+ SYF Y F   LS         C + SS+Y +  K V
Sbjct: 300 GMKSIMSYFYYNFSLLLSANTATHCIVCFFMSSQYRIAAKQV 341


>U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical
           protein C02G6.1 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 699 CPHPLKTENAIYCFPVEIGRVVLTYSCGHTRRCTTSDYANYNF 571
           C H L    A Y    E  +  LT + GH    T SD+ NY+F
Sbjct: 72  CEHMLFLGTAKYPTENEYSKF-LTDNAGHRNAVTASDHTNYHF 113


>AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein122 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 299 ILRAGLHSLHSYFLYVFISSLSCTGVLKKNYCIYRSSRYSLKDKTVHLY 445
           IL  G H++ + F Y+F   ++         C++ SS+Y  +  T+H++
Sbjct: 298 ILAPGAHNMLNQFGYIFSMLITLNTCTHLFVCLFMSSQY--RSTTIHVF 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,535,688
Number of Sequences: 27780
Number of extensions: 388511
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)