Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1884
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 114 4e-26
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 114 4e-26
08_02_0657 - 19749835-19751942,19753123-19753561 43 2e-04
04_04_0545 + 26141335-26141793,26141883-26141981 32 0.28
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 31 0.87
09_04_0029 - 13932414-13933416,13933821-13933903 29 2.0
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 29 2.7
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073... 29 2.7
02_05_0771 - 31628535-31629133,31629223-31629987,31630808-316309... 29 2.7
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 4.6
12_01_0442 + 3495333-3496484 28 6.1
04_03_0980 + 21406822-21409496,21410322-21410376 28 6.1
03_02_0816 + 11487811-11488708,11488835-11489235 28 6.1
11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583... 27 8.1
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 27 8.1
09_04_0030 + 13940168-13940250,13940703-13941714 27 8.1
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 27 8.1
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 27 8.1
>10_08_0170 + 15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 114 bits (275), Expect = 4e-26
Identities = 63/120 (52%), Positives = 72/120 (60%)
Frame = -3
Query: 575 TEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFALR 396
TEICQRACK AIR+ IE +I RER M+ DE D + EI AHFEE+MK+A R
Sbjct: 703 TEICQRACKYAIRENIEKDIERERRSKENPE--AMEEDEVDDIAEIKAAHFEESMKYARR 760
Query: 395 SVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLYS 216
SVSD DIRKY+ FAQTLQQSRGFG+ FRF + DDDLYS
Sbjct: 761 SVSDADIRKYQAFAQTLQQSRGFGSEFRFERTEAGAGAAADPFASAAAVAD---DDDLYS 817
>03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 114 bits (275), Expect = 4e-26
Identities = 63/120 (52%), Positives = 72/120 (60%)
Frame = -3
Query: 575 TEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFALR 396
TEICQRACK AIR+ IE +I E+ R M+ DE D + EI AHFEE+MK+A R
Sbjct: 694 TEICQRACKYAIRENIEKDIEMEKRRKDNPE--AMEEDEVDDIAEIKAAHFEESMKYARR 751
Query: 395 SVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLYS 216
SVSD DIRKY+ FAQTLQQSRGFGT FRF + DDDLYS
Sbjct: 752 SVSDADIRKYQAFAQTLQQSRGFGTEFRFADQPASGAGAAADPFASAAAAAD--DDDLYS 809
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/72 (36%), Positives = 37/72 (51%)
Frame = -3
Query: 572 EICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFALRS 393
EICQRACKLA+R+ ++ ++ +D HF+ AMK A +S
Sbjct: 701 EICQRACKLAVREVVQKSTLVGKALAMAGAELTVD-------------HFKSAMKHARKS 747
Query: 392 VSDNDIRKYEMF 357
VS+ D+ KYE F
Sbjct: 748 VSELDVIKYEYF 759
>04_04_0545 + 26141335-26141793,26141883-26141981
Length = 185
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/92 (25%), Positives = 41/92 (44%)
Frame = +3
Query: 189 PRSRARHSLAVQVVVTPLLLERGLVAR*STRAPCSSRVCWESEVGSEAAALLQGLREHLV 368
P + R LA ++ + LLL + R+ + G EA A+++ +LV
Sbjct: 37 PPATGRRRLAASLLASQLLLLPAAATSVAGAFEFDLRITVPEQSGEEAEAVVKLHARNLV 96
Query: 369 LADVVVGHGAERELHRLLEVSAANLRNGVFLV 464
++ + REL L SAANL+ ++ +
Sbjct: 97 RVKGLIDARSWRELQAALRSSAANLKQDLYAI 128
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 573 GDMPASLQAGHSPGHRGGDPSREESPAAS 487
G A L+AGHSP D S E+SP++S
Sbjct: 333 GSPVARLRAGHSPATPSSDVSMEDSPSSS 361
>09_04_0029 - 13932414-13933416,13933821-13933903
Length = 361
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -1
Query: 286 GARVLQRATSPRSRRRGVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWR 107
G RV +TSP RR + + ++RD G + T +L+ A P P +
Sbjct: 202 GMRVTVISTSPGKRREALEHLGADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAPLFA 261
Query: 106 L 104
L
Sbjct: 262 L 262
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 274 LQRATSPRSRRRGVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRP-TTPTWRLAP 98
L R PR R R T T + R +PP + TR LSV P+ P P+ +A
Sbjct: 17 LSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAPSASPLLNPSIHVAA 76
Query: 97 AGS 89
A S
Sbjct: 77 APS 79
>07_03_1170 -
24505743-24505875,24506087-24506475,24507133-24507369,
24507967-24508136,24510196-24510316
Length = 349
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 177 GGDAPRSRARHSLAVQVVVTPL 242
GGDA ++ HSL+V V+V+PL
Sbjct: 211 GGDADTTQLYHSLSVPVIVSPL 232
>02_05_0771 -
31628535-31629133,31629223-31629987,31630808-31630905,
31631024-31631193,31631297-31631596,31632208-31632618
Length = 780
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/101 (26%), Positives = 48/101 (47%)
Frame = +3
Query: 153 TLVLVYRDGGDAPRSRARHSLAVQVVVTPLLLERGLVAR*STRAPCSSRVCWESEVGSEA 332
++ ++ + DA R + + VTPL + +G V A C+S C S +G EA
Sbjct: 424 SIAVIGHNANDATRLLGNYFGPPCISVTPLQVLQGYVKDTRFLAGCNSAACNVSSIG-EA 482
Query: 333 AALLQGLREHLVLADVVVGHGAERELHRLLEVSAANLRNGV 455
A L + +++VL + + ERE LE+S ++ +
Sbjct: 483 AQLASSV-DYVVLF-MGLDQDQEREEVDRLELSLPGMQENL 521
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 564 PASLQAGHSPGHRGGDPSREESPAASRRCR 475
P ++ AGH GHRGG SP R R
Sbjct: 41 PIAIAAGHGRGHRGGGHGGPASPRHHLRGR 70
>12_01_0442 + 3495333-3496484
Length = 383
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -1
Query: 253 RSRRRGVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTW 110
RS G +T C A R +G+ P R + PA P +P W
Sbjct: 132 RSGPMGRSTLCNACGVRLRAVGSLPEHRAPAARTTTAAPASPPDSPIW 179
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 384 VGHGAERELHRLLEVSAANLRNGVFLVHVHNGSG 485
V G+ E+ + EV LR+ F+V HNGSG
Sbjct: 31 VDEGSRSEIMSVAEVIDQVLRDHKFMVAFHNGSG 64
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 285 PCSSRVCWESEV--GSEAAALLQGLREHLVLADVVVGHGAERELHRLLEVSAA 437
P SS + W G EAAA R V GHGA+ E H V AA
Sbjct: 336 PPSSEISWRHRRRWGLEAAAASGRSRAMAESVGEVWGHGADEERHEAGRVGAA 388
>11_05_0075 +
18856659-18856878,18856890-18857107,18858253-18858319,
18858706-18859397
Length = 398
Score = 27.5 bits (58), Expect = 8.1
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 96 AGARRHVGVV--GRHAGQTDRTLVLVYRDGGDAPRSRARHSLAVQVVVTPLLLERGLVAR 269
AG R G + G H G+ RT L+ A R AVQ +VTP ++A+
Sbjct: 251 AGRRAIAGRLAKGEH-GRRRRTGGLLPDSAATARRRVEGGDAAVQGIVTPSQESELVIAK 309
Query: 270 *STRAPCSSRV-CWESEVGSEAAALLQGL 353
+ + WE + G+EA ALL+ L
Sbjct: 310 TGDVIASTYYMRAWERDAGAEADALLEEL 338
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 36 AAVCLELHVRCLRHYRIREPAGARRHVGVVGRHAGQ 143
A C +V+C+ + +RE R+H V +AG+
Sbjct: 190 ALYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGE 225
>09_04_0030 + 13940168-13940250,13940703-13941714
Length = 364
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -1
Query: 286 GARVLQRATSPRSRRRGVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWR 107
G RV +TSP R+ + + ++RD G + T +L+ A P P +
Sbjct: 205 GMRVTVISTSPGKRQEALEHLGADEFLVSRDAGQMAAAAATMDGILNTVSAWHPIAPLFS 264
Query: 106 L 104
L
Sbjct: 265 L 265
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 375 DVVVGHGAERELHRLLEVSAANLRNGVFLVHVHNGSGGLLL 497
D VVGH ++ H + ++ + NL + F V + N LLL
Sbjct: 33 DNVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLL 73
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 227 RRHPPPPGTWAGRP 268
RRHPPPPG A P
Sbjct: 40 RRHPPPPGPGARNP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,883,614
Number of Sequences: 37544
Number of extensions: 414290
Number of successful extensions: 1741
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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