Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1884
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.54 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 104 QAPCWCGGATRRTNRQDVSSGLSRWWRCPEV 196
           Q   W G      N  D + G  R+WR P V
Sbjct: 258 QTKGWDGSNMVEGNESDHNDGRLRYWRTPSV 288



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 566 CQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDP 450
           C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 577 CVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 615


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 566 CQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDP 450
           C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 343 CVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 381


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 566 CQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDP 450
           C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 258 CVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 296


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 564 PASLQAGHSPGHRGGDP 514
           PA++Q GH+P H    P
Sbjct: 454 PAAIQIGHTPHHHPHPP 470


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 398 RSVSDNDIRKYEMF 357
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 526 RRRSIARGVASSKPPLPLWTWTR 458
           ++++  +G AS+  P PL+ W R
Sbjct: 243 QQQAAPQGAASANLPSPLYPWMR 265


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 425 FEEAMKFALRSVSDNDIRKYEMFAQT 348
           FEEA + ALR V +N I  ++ + +T
Sbjct: 216 FEEAFQKALRMVDEN-INGFDPYVKT 240


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 396 LRVRQRHPQVRDVRADPAAEPRLRNQ 319
           ++V Q+   + D   DP++EP + +Q
Sbjct: 110 MQVPQQGASIDDSDPDPSSEPTVHSQ 135


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 396 LRVRQRHPQVRDVRADPAAEPRLRNQ 319
           ++V Q+   + D   DP++EP + +Q
Sbjct: 558 MQVPQQGASIDDSDPDPSSEPTVHSQ 583


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 327 RNQLQIPNKRGSYRGHGYFS 268
           R +   P+K  +YR HGY S
Sbjct: 603 RMRYAAPHKAFTYRMHGYAS 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,505
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)