Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1883
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.67 
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    29   0.67 
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   2.7  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   3.6  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   3.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   6.3  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   8.3  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 551 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLE 667
           A+R R   G D + +I  EV P+P  SES +     LL+
Sbjct: 353 ARRQRRKKGIDETSKIIEEVQPTPLTSESATKVIGVLLQ 391


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 533 DHAEPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSP 652
           D ++P  ++P PD G +  +   S   P+P   E   +SP
Sbjct: 151 DSSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSP 190


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -1

Query: 633 SDSQGLGLTSLDIRSETSVPGSGLGLFAFGSAWS 532
           S   GLGLTS   +  T+   SG    AFGS WS
Sbjct: 408 SSQAGLGLTS---QQPTAAKSSGSNGDAFGSLWS 438


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 609 TSLDIRSETSVPGSGLGLFAFGSAWSKLHRG 517
           +S  IR +T VP    G  AFG  + +LH+G
Sbjct: 118 SSCYIRHDTVVPKDKNGQHAFGRLYVRLHQG 148


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 609 TSLDIRSETSVPGSGLGLFAFGSAWSKL 526
           TSL    E+++   GLG   FG+ W+ L
Sbjct: 78  TSLKTHPESAITRYGLGYAGFGNGWTAL 105


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 23/81 (28%), Positives = 32/81 (39%)
 Frame = +2

Query: 443 LCVSSRYVVESMVTLMPCGYLGGTSPRCSLDHAEPKAKRPRPDPGTDVSDRISSEVNPSP 622
           LC SS+ VV  +   +P      +S    L  A    + P      D +D     V+ S 
Sbjct: 155 LCNSSKRVVGMLRRFLP------SSRMVRLSKAHQPLRIPTTGVSLDSADLTPLSVSTSH 208

Query: 623 CESESTSNSPPSLLEDATLPA 685
               STSNSP  L   +  P+
Sbjct: 209 LNHPSTSNSPDPLYSASQPPS 229


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 554 KRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAPFSLLEPS 709
           +RP   PG  V D +S     S   S    ++ PSLL    L  P   L PS
Sbjct: 55  RRPSFLPGVSVPDTLSVRSGFSIPSSSHHPSAVPSLLSQHRLQQPQPRLYPS 106


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 559 SFRLRLGVVQAASRRRAAEVPTRHQCHHAFDNIPRTHAQH 440
           + R   G+   ASR +++E P      HA  N+P+   +H
Sbjct: 208 TMRSNNGLSILASRLKSSEAPMHVHICHAIKNLPKILKKH 247


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 527 SLDHAEPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSP 652
           S D+ E  +   R       SDR+S +V+P    + ST N+P
Sbjct: 271 STDYLENGSDLKRSLGHNQKSDRVSKDVSPQHQANPSTLNNP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,009
Number of Sequences: 5004
Number of extensions: 54106
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)