Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1883
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0421 + 24065725-24066052,24066811-24067040 32 0.53
02_03_0367 + 18220099-18220905 31 0.93
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 31 1.2
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 31 1.2
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 30 1.6
04_04_0675 + 27183826-27184443 30 2.1
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 29 3.7
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 29 3.7
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 29 3.7
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 29 3.7
08_02_0788 + 21201533-21201808,21201923-21202012,21202501-212025... 29 4.9
05_03_0485 + 14608663-14608989,14609265-14609535,14609720-146098... 29 4.9
05_03_0033 - 7585267-7586028 29 4.9
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 28 6.5
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 28 6.5
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 28 6.5
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 28 6.5
02_04_0361 - 22359278-22359439,22362291-22362728 28 6.5
01_01_0727 - 5675215-5675277,5675523-5675621,5676645-5676782,567... 28 6.5
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 28 8.6
11_06_0610 - 25449085-25453284 28 8.6
11_01_0124 + 975921-976589,1010229-1011290 28 8.6
03_04_0055 + 16891212-16891848,16893166-16893206 28 8.6
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 28 8.6
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 491 PCGYLGGTSPRCSLDHAEPK------AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSP 652
PCGYLG + R S H+ PK R R G + +RI + +S+ S
Sbjct: 74 PCGYLGNSICRVSAGHSTPKRGVGCPPARARSGTGRGMRERIQKGEDSRGLDSDC---ST 130
Query: 653 PSLLEDATLPAPFSLLEP 706
LL AT F ++P
Sbjct: 131 AQLLMTATTSYDFKWIQP 148
>02_03_0367 + 18220099-18220905
Length = 268
Score = 31.1 bits (67), Expect = 0.93
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 518 PRCSLDHAEPKAKRPRPDPGTDVSDRIS--SEVNPSPCESESTSNSPPSLLEDATLPAPF 691
P S K KR P P + +S +++ + P P E ++ PPS L P P
Sbjct: 138 PSSSSSKRRDKGKRRPPPPPSPMSPKVTPAQQQPPQPAEKVHDASPPPSSLFPPLPPPPP 197
Query: 692 SLLEPSTLF 718
E +T F
Sbjct: 198 PAPEATTTF 206
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 550 LRLGVVQAASRRRAAEVPTRHQCHHAFDNIPRTHAQ--HTSMSL*QFYWRETVCMRHCFA 377
L L +++AA R RA+ R HH D+IPR H H + L ++ +RH A
Sbjct: 281 LALALLRAACRVRASPC-LRPLAHHLLDHIPRPHPHLLHAAARLAYRLRLPSLALRHYVA 339
Query: 376 FR 371
R
Sbjct: 340 LR 341
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 557 RPRPDPGTDVSDRISSEVNPSPCESESTSNSPPS 658
RPR PG D+ R+ VN S S + NSP S
Sbjct: 105 RPRETPGRDLIARLKERVNASRKRSLNRENSPSS 138
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 702 SKRLKGAGSVASSSRDGGEFEVDSDSQGLGLTSLDIRSETSVPGSGLGL 556
S + AGS + D G F + S G+ S D ++T +PG LG+
Sbjct: 119 SASVLSAGSAKAQLLDNGNFVLRFASAGVAWQSFDYPTDTLLPGMKLGI 167
>04_04_0675 + 27183826-27184443
Length = 205
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 548 KAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATL-PAPFS 694
++KR RP P D D + PSP S S S SPP L PAP S
Sbjct: 78 RSKRRRPCPLLDAIDLLDG---PSPSASPSQSPSPPPPASPPPLPPAPSS 124
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 542 EPKAKRPRPDPGTDVSDRISSEVNPSPCESE-STSNSPPSLLED 670
EP +P PDP T S + PSP E N P +D
Sbjct: 100 EPSFAKPEPDPSTSSGLTKESSLEPSPDSKEIQAPNCAPRFRDD 143
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 573 GSGLGLFAFGSAWSKLHRGDVPPRYPHG 490
G+GLG+ FG A+ +H G V R+P G
Sbjct: 201 GAGLGITLFGMAYMFVHDGLVHRRFPVG 228
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 573 GSGLGLFAFGSAWSKLHRGDVPPRYPHG 490
G+GLG+ FG A+ +H G V R+P G
Sbjct: 225 GAGLGITLFGMAYMFVHDGLVHRRFPVG 252
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 573 GSGLGLFAFGSAWSKLHRGDVPPRYPHG 490
G+GLG+ FG A+ +H G V R+P G
Sbjct: 228 GAGLGITLFGMAYMFVHDGLVHRRFPVG 255
>08_02_0788 +
21201533-21201808,21201923-21202012,21202501-21202588,
21202811-21202944,21203086-21203135,21203248-21203340,
21203469-21203560,21203762-21203868,21204194-21204229
Length = 321
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 537 WSKLHRGDVPPRYPHGISVTMLSTTYRELT 448
WS L R DVP +P IS+TM++ Y +T
Sbjct: 99 WSVLRRWDVPWEWP-TISLTMVACAYSSVT 127
>05_03_0485 +
14608663-14608989,14609265-14609535,14609720-14609830,
14609870-14610423
Length = 420
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -2
Query: 599 IFDLKHQCLDRVLVFSPSARRGPSCIAATCRRGTHTASVSPC 474
+ L QC + +L P ++ P C TC G H + C
Sbjct: 330 VVKLTEQCSNVILHRLPEKKKNPGCPTITCSIGVHQFDQALC 371
>05_03_0033 - 7585267-7586028
Length = 253
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 542 EPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAPFSLLEP 706
EPKA+ +P+P T+ +E P + P S E T P P S EP
Sbjct: 184 EPKAES-QPEPKTEPKSESKAEPKPERKSYSKSKPEPESKPEAKTEPQPESKPEP 237
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 551 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSL 661
AKR PDP + SS +PS SE S+SP S+
Sbjct: 2 AKRSSPDPASSSPSASSSPSSPSSSSSED-SSSPMSM 37
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 551 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSL 661
AKR PDP + SS +PS SE S+SP S+
Sbjct: 2 AKRSSPDPASSSPSASSSPSSPSSSSSED-SSSPMSM 37
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 569 DPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAP 688
D D + R++S++ P P E +PP + T P P
Sbjct: 21 DDDADTNRRLASDLTPPPSRPEPDQAAPPPPPQPHTAPPP 60
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 506 GGTSPRCSLDHAEPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNS 649
GG P+ A A P+ P DV R S P+P + S S+S
Sbjct: 33 GGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPSTRKPNPTKLRSPSSS 80
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 500 YLGGTSPRCSLDHAEPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSL 661
YL R L HA P P P P + ++ E+ P P E + P ++
Sbjct: 14 YLSSLIRRTKL-HAAPALAPPPPTPPPEPETKLQLEMEPQPERVEEAAKKPAAV 66
>01_01_0727 -
5675215-5675277,5675523-5675621,5676645-5676782,
5676878-5676995,5678177-5678520
Length = 253
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Frame = +2
Query: 509 GTSPRCSLDHAEPKAKRPRPDPGT-DVSDRISSEVNPSPCESESTSNSPPSLL----EDA 673
GT + PK + PRP+PG +R P P + +LL +
Sbjct: 21 GTLSSLFAPRSSPKPRAPRPEPGDGPPQERRKPRARPRPRSRQPWGEEAAALLRRFYDGG 80
Query: 674 TLPAPFSLLEPSTLFP 721
LP P + P L P
Sbjct: 81 YLPGPDLSVAPHVLSP 96
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 437 RVLCVSSRYVVESMVTLMPCGYLGGTSPRCSLDHAEPKAKRPRPDPGTDVSDRISSEVNP 616
+V+C SS V S +T +SP C+ + ++K + D+ + +S E +
Sbjct: 477 KVICSSSEPSVGSNLTTSCI-----SSPGCTPNDLNSQSKSDNGETAVDIENSLSGETSG 531
Query: 617 SPCESESTS 643
+ C SE +
Sbjct: 532 TVCSSEGNN 540
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/71 (28%), Positives = 27/71 (38%)
Frame = +2
Query: 509 GTSPRCSLDHAEPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAP 688
G SP A P P P+ T + + SP ES ++SPP + P+P
Sbjct: 584 GESPPTPESKASPP---PTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSP 640
Query: 689 FSLLEPSTLFP 721
PS P
Sbjct: 641 PESTPPSEKSP 651
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 551 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDAT 676
A++P P PGT V ++ +P + SN P L++ T
Sbjct: 2 AEKPPPSPGTGVKPPVTKTGAANPSTEVNPSNIVPVTLDNLT 43
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 536 GPSCIAATCRRGTHTASVSPCFRQHTANS 450
G A+T GT AS +P +QHTAN+
Sbjct: 116 GERAAASTTGAGTSAASTTPPQQQHTANA 144
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 479 VTLMPCGYLGGTSPRCSLDHAEPKAKRPRPDPGTDVSDRISSEVNPSPCE--SESTSNS 649
+T MP L T+ + S+ + + +P +D+S+++S + PC S+ST+N+
Sbjct: 647 LTAMPSSELNTTNFQKSMASNDDVCENLALEPSSDISEQVSIFKDNVPCSKISQSTANA 705
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,677
Number of Sequences: 37544
Number of extensions: 376011
Number of successful extensions: 1661
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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