Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1883
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    31   1.1  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical p...    25   4.6  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   7.8  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   7.8  

>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 633 SDSQGLGLTSLDIRSETSVPGSGLGLFAFGSAWSKLHRGDVPPRYPHGISVTMLS 469
           SD   LG+T L+  ++  VP +G        +W ++  G +P R+  GIS  + S
Sbjct: 283 SDIFSLGMTILEATTDLDVPSNG-------DSWHQIRNGQIPDRFFAGISTDLRS 330


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
           protein H06I04.5 protein.
          Length = 1138

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 539 AEPKAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLE-DATLPAP 688
           AEP A  P+P P  D       +  P P  ++    SPP ++  D+ +PAP
Sbjct: 676 AEPSAPEPKPAPKPDPKPDPKPDPKPDPVPAKPV--SPPVIVPIDSIVPAP 724


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 491 PCGYLGGTSPRCSLDHAEPKAKRPRPDPGTD--VSDRISSEVNPSPCESESTSNSPPSL 661
           P GY+ GT+   S   AEP  + P P P  +   +   SSE  P+P  +   + +P ++
Sbjct: 243 PEGYVDGTANAASAV-AEPAVETPAPAPAAEETPAPATSSEEAPAPAPTAEETPAPETV 300


>Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical
           protein C08F11.17 protein.
          Length = 126

 Score = 25.0 bits (52), Expect(2) = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 278 YIYETSVTKSWITSTTKK 331
           Y+Y   VT SW+ STT +
Sbjct: 47  YLYGCGVTASWVFSTTSE 64



 Score = 22.2 bits (45), Expect(2) = 4.6
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 389 THTNCFPPIELSQ*H*RVLCVSSRYVVESMVTLMPCGYLGGTSPRCSLDHAEPKAKRPRP 568
           T + CF        +  V  VS++Y   ++ T  PCG +      CS    +   K P  
Sbjct: 61  TTSECFVSEYYKNKYNYVGAVSAKYNGSTICTKTPCGAVIKVQSNCSQAFYDRINKIPSD 120

Query: 569 D 571
           D
Sbjct: 121 D 121


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 566 PDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAPFSLLEPST 712
           P   T  S   SS    +P  +ESTS SP S +  +T     S   PS+
Sbjct: 457 PVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSS 505


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 566 PDPGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAPFSLLEPST 712
           P   T  S   SS    +P  +ESTS SP S +  +T     S   PS+
Sbjct: 457 PVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSS 505


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 572 PGTDVSDRISSEVNPSPCESESTSNSPPSLLEDATLPAPFSLLEPSTLFP 721
           P T  + + +S  +P P  ++++S++P +   + T P+P + L  ST+ P
Sbjct: 351 PSTVSTSQGTSSTSPIPSTTQTSSSAPSTYTSNFT-PSPTTTLLTSTIAP 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,157
Number of Sequences: 27780
Number of extensions: 315034
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)