Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1883
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.72 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 289 NFGNKIMDNVNNKKTKISNNKCRSKTKP*TQNNDAYKLF 405
           +  NK + N NN K   +NN   +       NN+  KL+
Sbjct: 317 SLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -1

Query: 687 GAGSVASSSRDGGEFEVDSDSQGLGLTSLDIRSETSVPGSGL 562
           G G++ ++    GE + D D  G      D+ +    P  G+
Sbjct: 375 GVGAMNANGEAVGEVDEDDDDDGDDDDDDDVEAANGKPAEGM 416


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 621  GLGLTSLDIRSETSVPGSGLGLFAFGSAWSKLHRGDVPPRYPHGI 487
            G+  T    ++E  VPGS   +    S+   L    +PP  P+GI
Sbjct: 1199 GVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGI 1243


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 621  GLGLTSLDIRSETSVPGSGLGLFAFGSAWSKLHRGDVPPRYPHGI 487
            G+  T    ++E  VPGS   +    S+   L    +PP  P+GI
Sbjct: 1195 GVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGI 1239


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 310 DNVNNKKTKISNNKCRSKTKP*TQNNDAY 396
           DN +N     ++N+ R  +K   QNN+ +
Sbjct: 418 DNQDNNHYNHNHNQARHSSKSDNQNNNQH 446


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 720  GNNVDGSKRLKGAGSVASSSRDGGEFE 640
            G N DGS RL    +  S SR G   E
Sbjct: 1385 GRNDDGSDRLTSPPTPLSISRAGSRDE 1411


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 329 KQKYQTISADRKRNP 373
           K+ YQT+S D  R P
Sbjct: 405 KENYQTMSRDPARTP 419


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 329 KQKYQTISADRKRNP 373
           K+ YQT+S D  R P
Sbjct: 405 KENYQTMSRDPARTP 419


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 687 GAGSVASSSRDGGEFEVDSDSQGLG 613
           G+GS+ +S  D G  +V+S +   G
Sbjct: 237 GSGSLPASPADSGVSDVESSTSSGG 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,271
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)