Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1881
         (737 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ242938-1|CAB62168.1|  880|Drosophila melanogaster homeoprotein...    29   6.6  
AF181638-1|AAD55424.1|  880|Drosophila melanogaster BcDNA.GH0863...    29   6.6  
AE013599-217|AAM70823.1|  880|Drosophila melanogaster CG3268-PA ...    29   6.6  

>AJ242938-1|CAB62168.1|  880|Drosophila melanogaster homeoprotein
           phtf protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   ACFNRRLKRL*KVNGKIYILIAFSVVLNICYVFIKLC 119
           +C   R+  + + N  IYI + FS +L +  +F +LC
Sbjct: 563 SCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLC 599


>AF181638-1|AAD55424.1|  880|Drosophila melanogaster BcDNA.GH08636
           protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   ACFNRRLKRL*KVNGKIYILIAFSVVLNICYVFIKLC 119
           +C   R+  + + N  IYI + FS +L +  +F +LC
Sbjct: 563 SCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLC 599


>AE013599-217|AAM70823.1|  880|Drosophila melanogaster CG3268-PA
           protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   ACFNRRLKRL*KVNGKIYILIAFSVVLNICYVFIKLC 119
           +C   R+  + + N  IYI + FS +L +  +F +LC
Sbjct: 563 SCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLC 599


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,068,715
Number of Sequences: 53049
Number of extensions: 499355
Number of successful extensions: 943
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)