Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1880
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   0.18 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.3  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    23   2.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.9  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -1

Query: 487 GVQRDQRHSFARSWRDLPLILEXXXXXXXXXXXVHLSCRPRPDTSYD 347
           G   +Q  + A ++R  PL L             HL  RP  D+ YD
Sbjct: 23  GHHHEQSAAAAAAYRSFPLSLGMSPYASSQHHHHHLQARPPQDSPYD 69


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 493 KSEGPRQPRWTDTVEPKATTALGEVVVAKE 582
           +SEG ++P  TD++   A +AL  +  A +
Sbjct: 521 ESEGRQEPNMTDSLTRLANSALDNICQASD 550


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = -3

Query: 350 RRGMAGSIGPLAMGNADGGVGAG-CFTTPCCCSLNSCH 240
           R G      P   G+A      G C     CCS +SCH
Sbjct: 80  REGFFHEREPCIAGSAPCRKNTGRCAFDGICCSQDSCH 117


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 514  VVGAPQTCYGVQRDQRHSFARSWR 443
            V G P T   V+ + +HS    W+
Sbjct: 994  VPGGPPTSIRVETNDQHSLVVYWK 1017


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,665
Number of Sequences: 336
Number of extensions: 3134
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)