Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1880
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 29 0.44
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.44
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 27 3.1
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar... 26 4.1
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 26 5.5
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 7.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 29.5 bits (63), Expect = 0.44
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +1
Query: 400 VPADGIRPQGSAADRARSAQRNDADRAGRRSKSEGP---RQPRWTDTVEPKATTAL 558
V +G+ P G A + R++ D GRR P PRW DT E K AL
Sbjct: 813 VRGEGLHPDG--AGKIRTSYIVLTDNKGRRIGKTRPIHSMNPRWDDTFEVKTKDAL 866
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.5 bits (63), Expect = 0.44
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = -3
Query: 587 SGSLATTTSPRAVVALGSTVSVHLGCRGPSDLLR---RPARSASFLCALLARSAADP*GL 417
S S ++++S +V ST S H S RP+ S+SF+ + + + +
Sbjct: 196 SSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTV 255
Query: 416 IPSAGTGSKSSFVL*ATPGYFLRRGMAGSIGPLAMGNADGGVGAGC 279
PS+ + S SS V +T L A + L G A G+ GC
Sbjct: 256 TPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAG-AIVGIVIGC 300
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 265 VAAL*IRAICTCCGILSAVLKPTLNVYFRLK 173
+ L IR C CC S + KP+LN+ R++
Sbjct: 52 IVCLHIRC-CICCKYNSKIKKPSLNIALRIQ 81
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 605 YSVLTISGSLATTTSPRAVVALGSTVSVHLGCRGPSDLLRRPARSASF 462
Y + +S T R A +TVS+H+ R PS + R SF
Sbjct: 479 YGLPFLSNQRCPATPTRNPFAFENTVSIHMDGRQPSPIKSRNNNQMSF 526
>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 588 IRLLGDHNLAQSCGGLRFDCIS 523
IR +GD L Q+C L FD +S
Sbjct: 93 IRPIGDRLLQQTCSDLEFDILS 114
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 239 DGTNSKSSNRAW*SNRLPHHRQHYPSQGVQ*SQPYLVVRSIRAWPTRQMNSSILYLLTGS 418
+G S+ A +N HR++ PS+ S P+L+ I P +N + LT
Sbjct: 39 EGALPPYSDHALVNNPPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLNVLAICYLTYK 98
Query: 419 D 421
D
Sbjct: 99 D 99
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 239 DGTNSKSSNRAW*SNRLPHHRQHYPSQGVQ*SQPYLVVRSIRAWPTRQMN-SSILYL 406
+G S+ A SN HR++ PS+ S P+L+ I P +N +I YL
Sbjct: 39 EGALPPYSDHARVSNSPNTHRENNPSRSTDNSSPFLIKLLISFTPIYVLNVLAICYL 95
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 253 KEQQQGVVKQPAPTPPSALPIARGPIEPAIP 345
+EQQ+ ++K P P PP+ + P +P
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVP 752
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 283 PAPTPPSALPIARGPIEPAIP 345
P PTPPS P A + P+ P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAP 436
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +1
Query: 157 TMERSVLAESRHLRWASELHSEYRSTYRWHEFKEQQQGVVKQPAPTPPSALPIARGP 327
T+ ++ L E HL + EL RW P P PP ALP A P
Sbjct: 1847 TVYKAKLGEKSHLHYDKELK-------RWVNDDGSDLSNQAAPPPPPPMALPKAGPP 1896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,243
Number of Sequences: 5004
Number of extensions: 51563
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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