Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1880
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 33 0.13
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 33 0.13
AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical ... 33 0.13
AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical ... 33 0.13
AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical ... 33 0.13
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 31 0.94
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 29 2.2
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical ... 29 3.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 5.0
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 28 5.0
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 28 5.0
AF100306-8|ABB88213.1| 860|Caenorhabditis elegans Hypothetical ... 28 5.0
AF100306-7|ABB88214.1| 895|Caenorhabditis elegans Hypothetical ... 28 5.0
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 5.0
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 5.0
AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical ... 28 5.0
Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical p... 28 6.7
Z75544-3|CAA99879.1| 212|Caenorhabditis elegans Hypothetical pr... 28 6.7
U13876-13|AAA21172.3| 370|Caenorhabditis elegans Prion-like-(q/... 28 6.7
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 6.7
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 6.7
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 28 6.7
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 28 6.7
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 28 6.7
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 33.5 bits (73), Expect = 0.13
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 QQGVVKQPAPTPPSALPIA-RGPIEPAIPRRKKYPGVAYKTNELFDPVPADGIRPQGSAA 438
QQ +Q PTPP ALPIA +GPI +P P V P + G PQ
Sbjct: 216 QQVQHQQHIPTPPLALPIAQQGPISNEVP---SVPPVV--------PATSAGC-PQREPR 263
Query: 439 DRARSAQRNDADRAGRRSKSEGP 507
+ ++N R GRR K EGP
Sbjct: 264 QQQGGRRQN---RPGRRKKPEGP 283
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 33.5 bits (73), Expect = 0.13
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 QQGVVKQPAPTPPSALPIA-RGPIEPAIPRRKKYPGVAYKTNELFDPVPADGIRPQGSAA 438
QQ +Q PTPP ALPIA +GPI +P P V P + G PQ
Sbjct: 216 QQVQHQQHIPTPPLALPIAQQGPISNEVP---SVPPVV--------PATSAGC-PQREPR 263
Query: 439 DRARSAQRNDADRAGRRSKSEGP 507
+ ++N R GRR K EGP
Sbjct: 264 QQQGGRRQN---RPGRRKKPEGP 283
>AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical
protein W04B5.3c protein.
Length = 353
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 PAPTPPSALPIARGPI-EPAIPRRKKYPGVAYKTNELFDPVPADGIRPQ 426
P P PPS++P++ P P++P YP A T + P+P R Q
Sbjct: 277 PMPQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQQ 325
>AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3a protein.
Length = 426
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 PAPTPPSALPIARGPI-EPAIPRRKKYPGVAYKTNELFDPVPADGIRPQ 426
P P PPS++P++ P P++P YP A T + P+P R Q
Sbjct: 277 PMPQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQQ 325
>AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3b protein.
Length = 426
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 283 PAPTPPSALPIARGPI-EPAIPRRKKYPGVAYKTNELFDPVPADGIRPQ 426
P P PPS++P++ P P++P YP A T + P+P R Q
Sbjct: 277 PMPQPPSSVPLSYTPAPTPSVPYTVTYPQSANSTPGIPQPLPQQMSRQQ 325
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 30.7 bits (66), Expect = 0.94
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3
Query: 416 IPSAGTGSKSSFVL*ATPGYFLRRGMAGSIGPLAMGNADGGVGAGCFTTPCCCS 255
+ S+ T S SS AT F + + A GN GG G+G TT C CS
Sbjct: 184 LTSSSTQSYSSSTAGATSSLFTIKVTQSTT---AAGNGQGGSGSGSATTTCKCS 234
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +1
Query: 271 VVKQPAPTPPSALPIARGPIEPAIPRRKKYPGVAYKTNELFDPVPADGIRPQGSAADRAR 450
+++ P P PP + P +P ++ K++E + G GS A
Sbjct: 263 IMQPPRPRPPISTADLCTPAFQQLPPPREEAMEIDKSSESSEHSTIAGAGEAGSITVTAS 322
Query: 451 SAQRNDADRAGRRSKSEGPRQP 516
S++++ AD G S E +P
Sbjct: 323 SSEKSPADSQGSASPDESTEEP 344
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 181 ESRHLRWASELHSEYRSTYRWHEFKEQQQGVVKQPAPTPPSALPIARGPIEP 336
+ R + + H E+++ + H+ ++QQQ +Q P P P + P P
Sbjct: 225 QQREQQQREQQHREHQARLQQHQQQQQQQQQQQQQRPPQPQPQPQPQPPQRP 276
>AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical
protein T23C6.3 protein.
Length = 533
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 280 QPAPTPPSALPIARGPIEPAIPRRKKYPGVAYKTNELFDPVPAD 411
Q P PP ++P P P IP P + N L P D
Sbjct: 456 QALPMPPQSIPSMIPPFIPTIPSTSTMPPMMPYPNVLLTAAPGD 499
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +1
Query: 283 PAPTPPSALPIARGPIEPAIPRR---KKYPGVAYKTNELFDPVPADGIRPQGSAAD-RAR 450
P PP + P R P+ P P+R + P + P P P+ ++ D RA
Sbjct: 147 PRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNSHDRRAL 206
Query: 451 SAQRNDADRA---GRRSKSEGP 507
A+R R GRRS S+GP
Sbjct: 207 RARRPMVHRPAPYGRRSISQGP 228
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/120 (21%), Positives = 45/120 (37%)
Frame = +1
Query: 205 SELHSEYRSTYRWHEFKEQQQGVVKQPAPTPPSALPIARGPIEPAIPRRKKYPGVAYKTN 384
+EL ++ T WH + + +Q A P + + E A P VA
Sbjct: 19 AELQRDHYKT-EWHRYN-----LKRQAAELPAIGIELFN---EKAASFNPTKPVVAASVE 69
Query: 385 ELFDPVPADGIRPQGSAADRARSAQRNDADRAGRRSKSEGPRQPRWTDTVEPKATTALGE 564
L+ I+ + + D S + + ++ +GP+QPR PK +L E
Sbjct: 70 PLYCKACRKSIKSENAMTDHVASKKHKENEKKIEDDVKKGPKQPRKKPENLPKKPESLKE 129
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 335 QPYLVVRSIRAWPT--RQMNSSILYLLTGSDLKDQRQIAPGARK 460
+ +L+ R ++ P +Q+N ++LY L S L Q A G K
Sbjct: 50 EEHLITRVLQVLPKTRKQINDNVLYKLVSSHLSSDAQFAEGMLK 93
>AF100306-8|ABB88213.1| 860|Caenorhabditis elegans Hypothetical
protein T24C4.6a protein.
Length = 860
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +2
Query: 332 SQPYLVVRSIRAWPTRQMNSSILYLLTGSDLKDQRQIAPGARKGMTLIALDAVASLRGPD 511
S YL RS + + + L+TG + + IA + + ++ +A+A RG
Sbjct: 139 SNAYLYARSTHFPMLTSIRMTSMDLVTGHQPRRKNGIASTEFRALFMLGEEALAEARGQM 198
Query: 512 NQDGLIQSNLRP 547
+DGL +S L P
Sbjct: 199 ERDGL-RSPLSP 209
>AF100306-7|ABB88214.1| 895|Caenorhabditis elegans Hypothetical
protein T24C4.6b protein.
Length = 895
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +2
Query: 332 SQPYLVVRSIRAWPTRQMNSSILYLLTGSDLKDQRQIAPGARKGMTLIALDAVASLRGPD 511
S YL RS + + + L+TG + + IA + + ++ +A+A RG
Sbjct: 139 SNAYLYARSTHFPMLTSIRMTSMDLVTGHQPRRKNGIASTEFRALFMLGEEALAEARGQM 198
Query: 512 NQDGLIQSNLRP 547
+DGL +S L P
Sbjct: 199 ERDGL-RSPLSP 209
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 253 KEQQQGVVKQPAPTPPSALPIARGPIEPAIP 345
++QQ G + P PP LP++ P +P P
Sbjct: 62 RQQQVGRPTESPPLPPPPLPLSNPPAKPTPP 92
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 253 KEQQQGVVKQPAPTPPSALPIARGPIEPAIP 345
++QQ G + P PP LP++ P +P P
Sbjct: 284 RQQQVGRPTESPPLPPPPLPLSNPPAKPTPP 314
>AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical
protein Y50D4C.5 protein.
Length = 540
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 310 PIARGPIEPAIPRRKKYPGVAYKTNELFDPVP 405
P R P +PA P+ ++ +A K NE D +P
Sbjct: 40 PRFRAPADPAEPKFRRTYSMAAKNNEKIDKIP 71
>Z99281-31|CAI79273.1| 160|Caenorhabditis elegans Hypothetical
protein Y57G11C.51 protein.
Length = 160
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 442 RARSAQRNDADRAGRRSK-SEGP-RQPRWTDTVEPKATTALGEVVVAKEPDMVSTEYRNQ 615
RA + + + RAGR + S P R PRW+ +P ++ + P ST +
Sbjct: 90 RANAREASARRRAGRDAGLSANPKRSPRWSPQPDPSTPSSSTSSSTSSSPSSSSTPLTS- 148
Query: 616 FALAQRRSP 642
QRRSP
Sbjct: 149 ---TQRRSP 154
>Z75544-3|CAA99879.1| 212|Caenorhabditis elegans Hypothetical
protein K02A11.2 protein.
Length = 212
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 287 AGCFTTPCCCSLNSCHLYVLRYSEC 213
+G F T CC ++C++Y + Y C
Sbjct: 6 SGGFLTTCCEMFSNCNIYSIHYIMC 30
>U13876-13|AAA21172.3| 370|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 46
protein.
Length = 370
Score = 27.9 bits (59), Expect = 6.7
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = +1
Query: 256 EQQQGVVKQPAPTP---PSALPIARGPIEPAIPRRK-KYPGVAYKTN-ELFDPVPADGIR 420
+Q Q V+QP PTP P + P++ + P A + N +L PV IR
Sbjct: 114 QQPQQPVQQPQPTPIRPPQPQRSGQQPVQSFESHTQIVQPVRAVQANAQLVQPV----IR 169
Query: 421 PQGSAADRARSAQRNDADRAGRRSKSEGPRQPR 519
P SA A + A +A +K+ G QP+
Sbjct: 170 PAASAVATAVVDTDSSAKKATEFNKANGIEQPK 202
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 418 RPQGSAADRARSAQRNDADRAGRRSKSEGPRQ 513
R + S+ R+RS + D +R RRS+S PR+
Sbjct: 91 RERRSSRSRSRSPRDRDRERRRRRSRSPPPRR 122
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 418 RPQGSAADRARSAQRNDADRAGRRSKSEGPRQ 513
R + S+ R+RS + D +R RRS+S PR+
Sbjct: 91 RERRSSRSRSRSPRDRDRERRRRRSRSPPPRR 122
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 439 DRARSAQRNDADRAGRRSKSEGPRQPRWTDT 531
+R R + +DR GRR+ E R+ R DT
Sbjct: 243 ERKRKRSHSSSDRRGRRTSKESRRRSRSRDT 273
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.7
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Frame = +1
Query: 253 KEQQQGVVKQPAPTPPSALPIARGPIEPAIPR----RKKYPGVAYKTNELFDPVPADGIR 420
K++++ VK P P+A P+A + A R R + G A + + +G R
Sbjct: 39 KKKEEKSVKPAQPVKPAAAPVAATKTDGAAGRGRGGRGRGRGGAGRPRDGERVSNENGDR 98
Query: 421 PQGS--AADRARSAQRNDADRAGRRSKSEGPRQPRWTDTVEPK 543
PQG R +R A AGR + R+ R + EPK
Sbjct: 99 PQGENRRGGPRRGGERGAARPAGRGGRGGFTRENR--EGEEPK 139
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 250 FKEQQQGVVKQPAPTPPSALPIARGPIEPAIPRRKKYPGVAYKTNELFDPVP 405
FK++ Q AP P + L + + + +KKYP + +E P P
Sbjct: 399 FKKKPAAPKTQAAPKPGAKLRETQAAQKKEVQTKKKYPSEKSEKSEATSPTP 450
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,751
Number of Sequences: 27780
Number of extensions: 311710
Number of successful extensions: 1213
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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