Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1878
(596 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF179181-1|ABN05284.1| 727|Homo sapiens LIM domain binding 3 pr... 31 3.1
AF276807-1|AAQ14316.1| 330|Homo sapiens Z-band alternatively sp... 31 3.1
AB014513-1|BAA31588.1| 734|Homo sapiens KIAA0613 protein protein. 31 3.1
BC093754-1|AAH93754.1| 587|Homo sapiens hypothetical protein LO... 31 4.1
BC093752-1|AAH93752.1| 587|Homo sapiens hypothetical protein LO... 31 4.1
AF131737-1|AAD20026.1| 587|Homo sapiens Unknown protein. 31 4.1
AC079353-1|AAY24034.1| 423|Homo sapiens unknown protein. 31 4.1
DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated... 30 7.2
AK127686-1|BAC87084.1| 401|Homo sapiens protein ( Homo sapiens ... 30 7.2
AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens ... 30 7.2
Y00790-1|CAA68744.1| 323|Homo sapiens protein ( Human mRNA for ... 29 9.5
X04038-1|CAA27672.1| 117|Homo sapiens protein ( Human germline ... 29 9.5
S73842-1|AAB31940.1| 136|Homo sapiens T cell receptor gamma cha... 29 9.5
S60175-1|AAB20082.2| 113|Homo sapiens T cell receptor gamma cha... 29 9.5
M13824-1|AAA61047.1| 134|Homo sapiens T cell receptor gamma cha... 29 9.5
M13430-1|AAA61042.1| 118|Homo sapiens TCRGV3 protein. 29 9.5
BC071739-1|AAH71739.1| 200|Homo sapiens TRGV3 protein protein. 29 9.5
AF542964-1|AAN33178.1| 306|Homo sapiens PlSC domain containing ... 29 9.5
>EF179181-1|ABN05284.1| 727|Homo sapiens LIM domain binding 3
protein.
Length = 727
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -3
Query: 270 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 91
P L SPE A + P + SS+ Y IG + TLR+ +++
Sbjct: 164 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 220
Query: 90 SSGHFGLPRRTLVFKD 43
+ GLP +L KD
Sbjct: 221 KASGVGLPGGSLPIKD 236
>AF276807-1|AAQ14316.1| 330|Homo sapiens Z-band alternatively
spliced PDZ-motif protein ZASP-4 protein.
Length = 330
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -3
Query: 270 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 91
P L SPE A + P + SS+ Y IG + TLR+ +++
Sbjct: 164 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 220
Query: 90 SSGHFGLPRRTLVFKD 43
+ GLP +L KD
Sbjct: 221 KASGVGLPGGSLPIKD 236
>AB014513-1|BAA31588.1| 734|Homo sapiens KIAA0613 protein protein.
Length = 734
Score = 31.1 bits (67), Expect = 3.1
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = -3
Query: 270 PARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 91
P L SPE A + P + SS+ Y IG + TLR+ +++
Sbjct: 171 PRASLRAKTSPE---GARDLLGPKALPGSSQPRQYNNPIGLYSAETLREMAQMYQMSLRG 227
Query: 90 SSGHFGLPRRTLVFKD 43
+ GLP +L KD
Sbjct: 228 KASGVGLPGGSLPIKD 243
>BC093754-1|AAH93754.1| 587|Homo sapiens hypothetical protein
LOC51057 protein.
Length = 587
Score = 30.7 bits (66), Expect = 4.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 131 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 262
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>BC093752-1|AAH93752.1| 587|Homo sapiens hypothetical protein
LOC51057 protein.
Length = 587
Score = 30.7 bits (66), Expect = 4.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 131 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 262
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AF131737-1|AAD20026.1| 587|Homo sapiens Unknown protein.
Length = 587
Score = 30.7 bits (66), Expect = 4.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 131 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 262
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>AC079353-1|AAY24034.1| 423|Homo sapiens unknown protein.
Length = 423
Score = 30.7 bits (66), Expect = 4.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 131 SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 262
SVR W+P++ R+G+ ++ +++ +S D E + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162
>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
protein protein.
Length = 5005
Score = 29.9 bits (64), Expect = 7.2
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 294 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 115
T YG + + V S + SRS E++ P+ R S S PY PS + + Q R
Sbjct: 1325 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 1381
Query: 114 LFPDLSAASS 85
+ +S A S
Sbjct: 1382 MDSSMSMADS 1391
>AK127686-1|BAC87084.1| 401|Homo sapiens protein ( Homo sapiens
cDNA FLJ45784 fis, clone NETRP2006468. ).
Length = 401
Score = 29.9 bits (64), Expect = 7.2
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 294 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 115
T YG + + V S + SRS E++ P+ R S S PY PS + + Q R
Sbjct: 311 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 367
Query: 114 LFPDLSAASS 85
+ +S A S
Sbjct: 368 MDSSMSMADS 377
>AK124902-1|BAC85988.1| 1168|Homo sapiens protein ( Homo sapiens cDNA
FLJ42912 fis, clone BRHIP3024533. ).
Length = 1168
Score = 29.9 bits (64), Expect = 7.2
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -3
Query: 294 TCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 115
T YG + + V S + SRS E++ P+ R S S PY PS + + Q R
Sbjct: 1078 TAAFYGDKQPVTVGVQFSSDVSRSDENVLDSPKQRRSFGSFPYTPSA---DSNSFHQYRS 1134
Query: 114 LFPDLSAASS 85
+ +S A S
Sbjct: 1135 MDSSMSMADS 1144
>Y00790-1|CAA68744.1| 323|Homo sapiens protein ( Human mRNA for
T-cell receptor gamma-chain. ).
Length = 323
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 62 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 92
>X04038-1|CAA27672.1| 117|Homo sapiens protein ( Human germline DNA
for T-cell receptor gamma V-gamma-1.1 region. ).
Length = 117
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 62 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 92
>S73842-1|AAB31940.1| 136|Homo sapiens T cell receptor gamma chain
protein.
Length = 136
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 6 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 36
>S60175-1|AAB20082.2| 113|Homo sapiens T cell receptor gamma chain
variable protein.
Length = 113
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 7 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 37
>M13824-1|AAA61047.1| 134|Homo sapiens T cell receptor gamma chain
variable region protein.
Length = 134
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 62 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 92
>M13430-1|AAA61042.1| 118|Homo sapiens TCRGV3 protein.
Length = 118
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 62 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 92
>BC071739-1|AAH71739.1| 200|Homo sapiens TRGV3 protein protein.
Length = 200
Score = 29.5 bits (63), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 499 PQKLYIFNMTLAKIVLRFGLDPGPAFSGLPR 591
PQ+L ++++ A+ VL GL PG ++ PR
Sbjct: 62 PQRLLYYDVSTARDVLESGLSPGKYYTHTPR 92
>AF542964-1|AAN33178.1| 306|Homo sapiens PlSC domain containing
hypothetical protein protein.
Length = 306
Score = 29.5 bits (63), Expect = 9.5
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Frame = -2
Query: 397 APVLRANPYSEVTDPICRLP--LPTLFYRLEALH---LGDLLRI--WVRTGATSPRTSLT 239
APVL A P+S DPI LP LP + R E L +G LLR + P +
Sbjct: 121 APVLVAAPHSTFFDPIVLLPCDLPKVVSRAENLSVPVIGALLRFNQAILVSRHDPASRRR 180
Query: 238 *IFKVRREYPDTAANAVLFAF-RTISPFYRIPWNSNAQAEKKTLPGPLGGVFRP-LWVTP 65
+ +VRR ++F R P R+ +SN + + L P +W P
Sbjct: 181 VVEEVRRRATSGGKWPQCYSFLRAPVPTRRLCLSSNQEPSSQGCLCSLSSSATPTVWTPP 240
Query: 64 S 62
+
Sbjct: 241 A 241
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,336,976
Number of Sequences: 237096
Number of extensions: 2147084
Number of successful extensions: 6152
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6152
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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