Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1878
(596 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 23 3.0
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 23 3.0
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 23 3.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.0
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 3.0
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 4.0
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 4.0
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 5.3
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 9.2
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 9.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.2
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 3.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 586 EGRRTRVRDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 410
E + R RD R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 61 ETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 117
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 3.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 586 EGRRTRVRDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 410
E + R RD R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 61 ETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 117
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.6 bits (46), Expect = 3.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 586 EGRRTRVRDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 410
E + R RD R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 61 ETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 117
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 416 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 514
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 416 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 514
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.6 bits (46), Expect = 3.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 586 EGRRTRVRDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 410
E + R RD R R S+ I ++ ++ N N+ K+ NI+ P P+PV
Sbjct: 294 ETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPV 350
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 22.2 bits (45), Expect = 4.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 586 EGRRTRVRDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 410
E + R RD R R S+ I ++ ++ N N+ K+ NI+ P P+P+
Sbjct: 61 ETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPI 117
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 108 PDLSAASSGHFGLPRRTLVFK 46
PDL+ S G GLP L +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 177 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 94
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 154 RIPWNSNAQAEKKTLPGPLG 95
+IPW+ N +A K G G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 63 DGVTQSGLKTPPRGPG 110
DG L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 427 PHPLPVQTRHAPVLRANPYSEV 362
P PLP A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,459
Number of Sequences: 438
Number of extensions: 4220
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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