Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1876
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 288 2e-78
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 286 1e-77
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 277 8e-75
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.86
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
07_03_1509 - 27246721-27247350 29 2.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.1
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 6.1
02_01_0254 - 1669461-1669590,1669833-1672318 28 6.1
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 28 8.0
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 8.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 288 bits (707), Expect = 2e-78
Identities = 133/194 (68%), Positives = 154/194 (79%)
Frame = -3
Query: 667 KNNRYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 488
KN YPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIAC 72
Query: 487 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIG 308
NKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IG
Sbjct: 73 NKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIG 132
Query: 307 QPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLAN 128
Q ++SVR + EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +
Sbjct: 133 QVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMS 192
Query: 127 DGCIVQYRPEHGPL 86
DG Q HG L
Sbjct: 193 DGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 286 bits (702), Expect = 1e-77
Identities = 130/192 (67%), Positives = 153/192 (79%)
Frame = -3
Query: 667 KNNRYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 488
KN YPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI C
Sbjct: 320 KNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIAC 379
Query: 487 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIG 308
NKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIG
Sbjct: 380 NKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIG 439
Query: 307 QPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLAN 128
Q ++SVR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+
Sbjct: 440 QVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVP 499
Query: 127 DGCIVQYRPEHG 92
DG + HG
Sbjct: 500 DGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 277 bits (678), Expect = 8e-75
Identities = 126/182 (69%), Positives = 147/182 (80%)
Frame = -3
Query: 667 KNNRYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 488
KN YPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA RI C
Sbjct: 9 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIAC 68
Query: 487 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIG 308
NKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IG
Sbjct: 69 NKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIG 128
Query: 307 QPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLAN 128
Q ++SVR EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ EGR+
Sbjct: 129 QVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMP 188
Query: 127 DG 122
DG
Sbjct: 189 DG 190
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 580 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 461
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 300 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 392
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 312 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 184
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 346 GKPQGTVARVRIGQPIMSVRSSD 278
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +2
Query: 41 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 166
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 32 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*YVD 211
V +RL++ S PPS + F A + AA +AAL LL+ + + P L +
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLRHLLSLPDPAPHLLALL 83
Query: 212 LLTSGELELGTAQSLD---DLCLPP 277
+S L L SL LC P
Sbjct: 84 SSSSSPLRLPLGFSLSAFRSLCALP 108
>11_04_0442 -
17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 669 AKITGIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCA 556
A+ +G N GS + ++ IWV +PL+ H +
Sbjct: 5 ARASGRANNGSAAMAIVDLCPDQIWVTPPQPLSVLHAS 42
>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
Length = 269
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -3
Query: 271 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 95
KA +I+ RR + K+PG QK+ + G K +A+DG ++Q +
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205
Query: 94 GPLDAWRKVQ 65
L AWR ++
Sbjct: 206 AGLPAWRPMK 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,259
Number of Sequences: 37544
Number of extensions: 491582
Number of successful extensions: 1452
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -