Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1874
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    28   2.0  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   4.7  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   6.1  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 58  PGCRNSAAA-DPFNLDVSMTHLLNEN 132
           PGC   A   DPFNL +SM   L EN
Sbjct: 743 PGCSTYALRQDPFNLSISMFERLVEN 768


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 509 VCYHFETIVLTYVFNIINYYLFI 441
           +CY ++ I+L Y   II YY ++
Sbjct: 51  ICYDYKNILLKYELFIIYYYYYL 73


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 70  NSAAADPFNLDVS-MTHLLNENTNNNVKSTTGS 165
           NS A+   N+D S + H L++  NN+  STTG+
Sbjct: 2   NSEASVFSNMDWSQLAHSLHKKANNSSSSTTGA 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,799
Number of Sequences: 5004
Number of extensions: 52059
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)