Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1874
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309...    34   0.17 
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665...    29   6.5  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    28   8.6  

>09_06_0028 +
           20328599-20328821,20330659-20330735,20330806-20330968,
           20331095-20331156,20331250-20331328,20331818-20331898,
           20332068-20332216,20332254-20332319,20332495-20332643,
           20332722-20332761,20333001-20333015
          Length = 367

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = -3

Query: 871 PHPFKPKRITAFTAELGRVVVPTRCGLTRDRTTSNYANYNFAGLICITRCYSFTVEINLE 692
           P PF  KRI+         VVP RC +T    T+    Y    L+  T C  F     L 
Sbjct: 291 PVPFLTKRISMAMLAEKCCVVPGRCYVTESPATTTGHTYRLVALLETTICMCFLEMDKLL 350

Query: 691 HLFRRISICNS 659
           H  R I + ++
Sbjct: 351 HRLRCIFVASA 361


>06_03_0437 -
           20765682-20765951,20766040-20766294,20766374-20766545,
           20766964-20767097,20767205-20767288,20767369-20767659,
           20767867-20768214,20768321-20768496,20768579-20768695,
           20768780-20768936,20769110-20769225,20769323-20769483,
           20769567-20769883,20769969-20770250,20770347-20770648,
           20771977-20772067,20773203-20773256,20773723-20773812
          Length = 1138

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 438 IYEQVVIDDIKYVSKDDRFEMITYNGIRDGLVAQSSSVRLGGSQRR 575
           I +Q + DDIK    D+  E++  + ++D LV       L   QR+
Sbjct: 726 IGDQEITDDIKIQFVDEVMELVELDNLKDALVGLPGITGLSTEQRK 771


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 874 VPHPFKPKRITAFTAELGRVVVPTRC 797
           +P PF P ++T +   L R+VVP RC
Sbjct: 101 MPPPFSPSQVTDYLDILSRIVVP-RC 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,709,941
Number of Sequences: 37544
Number of extensions: 332976
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)